Array 1 3948154-3948549 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCHL010000001.1 Nocardiopsis arvandica strain DSM 45278 Ga0415201_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 3948154 30 96.7 31 .............................G CCGACCGGGTGAGCTGGTCGTTGATGCTGCC 3948215 30 96.7 31 .............................A TCCCAGCGAAGACAGGCCCGTTCTCGATGCT 3948276 30 96.7 31 .............................T CGGCTTCCAGAGGCCAGTCCTGCACGGGCTT 3948337 30 100.0 31 .............................. GCACCCACCGCCGACCGCGACTGGCAGATCC 3948398 30 100.0 31 .............................. CGAGCAACCACCGACCTCGCCCTGGGCCGCA 3948459 30 96.7 31 .............................A TCGACTGGGATGACATCGAGTGGCCGCTCGC 3948520 30 83.3 0 ....................T..A.A..TG | ========== ====== ====== ====== ============================== =============================== ================== 7 30 95.7 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : ATCAGTGACGCATCCTATCCCCGCCCCGCGACCCTCCAGTGACCCGCTGTACCGTCCGCTTCCGCCGCTGCCCCGGCGTCGGCCCCTGGTGGGCCCGTTCTGCCCGGCGTGCGAGCACCCTTCCTGCCGCCAGCGCCGCGCGGCACGCCTGCCGCGTCTGGGCGGCCAGCGCTCCGAGTTCGCCCGCGAGCACGCCCGTGCTGCCGCTCTCCAGCGGTACAACCCGCACCTGATCATCTGGTTCGGTGAGCAGACGCTGTCCTACTGGGTTGCTTCACCCGCCGGCCTGACCGAGGCCCGGGATCCGGGCGATCTGCTCCTCCTCCTGGACCCTGCTCCCACCTACGCCTGGCATGTATCGGCGGGGGCATGGACTACGCCCCCGCCGGTACGCTGCTGCCATGGTTTTCCGAGGGTCGCAGGTGCTGCCTGATTTGTCTGTTTTTCGAGAAGTTGGAAAAACGGCTGCTTGCCGCTGGTAAGTTCCCAGGCCAGTTACT # Right flank : GTTGCGTGTGAGGCGTATGTCTGAGATTCGCGACTTCGGCTAGCTGCTTCTTCTCTGGGGTCCGGCGTTCGTCCTCACCGAGTAGTGCCCGAACACCTGACGATGACTGCCTTCGGAGGAAAGGCGGTCACCGCCGCACTTGCATAGGATGCTCGGCTGTACGGTCATACCAGAGCCGCCTGGTCAGGACAGGTGCCCGGTATCCCATCAAGCACGGAGAACGCACCATGACCGCGATGCCTATGGAACCCGAAGAAGGCCCTGGGGTCGGTCGTGACCTGAGAGGGTACGTGCTCGTCCCAGCTAGCTGGGTCGAGCACTATGAGCAGCTCATCGAGGAACACGATGATGCCGAGGCTGAGCGGATTTCCGCAGACGTCAAAGCTGGACGCGAACCAGTCTTCACCCATGACGAGGTATGGGGAGACGACGATTGAGCGGCCGCTACGTCCTCCAGTACACCAATACCGCACGTAAGGGCATCAAGCGCCTCGACGGAT # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3949504-3949838 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCHL010000001.1 Nocardiopsis arvandica strain DSM 45278 Ga0415201_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 3949504 30 96.7 31 .............................C CCGGTCGGCAGGCTGTCAGCGTCGGGGCGCT 3949565 30 96.7 31 .............................A GGTGCCGCGACCCCGAGTAGGTGGCGCGCGT 3949626 30 100.0 31 .............................. GCTGTAGCCCGGCGATGAGCGTGCCCACGAC 3949687 30 100.0 31 .............................. CGAGTCCACGCTGACCGCTTCCACGGAGACG 3949748 30 100.0 31 .............................. CCATCCACTCCGCGCCGCGCTCCCTACAGAA 3949809 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== =============================== ================== 6 30 98.4 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : AGTACACCAATACCGCACGTAAGGGCATCAAGCGCCTCGACGGATCCGTTCGCAAGCGGGTACGGGCAGCGATCGAGGCGCTCGCCGATGATCCCCGACCGAATGGATGCGTCCAGGTCAAAGGCCACCCTGACATGTGGCGCATCCGCGTCGGTGACTACCGCATTCGCTACGAGCTCGATGATGGTGTTCTCGTCGTTCTGGTTCTTAAGGTTGCTCCCCGAGGCGGATTCTACGACGACCTGTAGCTCTCTCAGGGGAAGCGCGGGTAGTCAGGTCCCGCCTTGGCAGGAAGGGTGCCCACGCAGTAGTGACTCGACCAGTTTTGTTCCGCTCCTGTTTTCGCCTGTTGGTGCATTACTGGTGGGAGATCGATGAGTCTCTGCCGGTACGCTGCTGCCGTGGTTTTCCGAGGGCCACAGATGCTGTCCGGTTTGTCTGTTTTTCGAGAAGTTGGAAAAACGGCTGCTTGCCGCTGGTAAGTTTCCAGGTCAGTTACT # Right flank : AATCCGGGGTGTTTCATGCTGTTTCCTTGGTGATGCGCCGGGCCCATCAGCCACGCGCGTAGTCGCTCGGGTGTCGACGCAGACACTCCTCGCTGAATTCGCTGCCATCTAATGGGCCAGTCAGTGTTTGCCCGCCGAAGGACGGGTAGGGGCCGGGAGAGCACCTGCGCGCCTCGCGGGCCACGGGGGGCGGCCATCACGGCCGTGTGGCCCAGGGATGACACGGCGCGGGTGCGGGGTCGGCGCCCACGGGGGTGAGCGCGCACGGCCCGCGCTGGACCGCCGGTATCGGGGGATCCGCAGGGTTCGGCGAGATGCGAGAGCCCCCGCGCAACCGAGCGTTGCGCGGGGGTTTTTCTCATGCCGGGCAGGGTCCGATGCGAACTCCCTGACCCGCGCACCATCACCGCCTGCTGTTCCTGGGGAGAGCCACGTTGGGCAGCAGCACGGCCACAGCCGTCGCGACTCCACCAGGAGCTGGACGGTACGGGCTCGAAGAA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 4789948-4790282 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCHL010000001.1 Nocardiopsis arvandica strain DSM 45278 Ga0415201_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 4789948 30 96.7 31 .............................T GCTTCGCCTTGAGCCGGGCGCTGAGATCTGC 4790009 30 100.0 31 .............................. CGACCGCGTCCTTGGGGAACGTGGTGGCGGC 4790070 30 96.7 31 .............................C GGTCGAGGCGCGCGGCCGGTCGAGGCCTCCG 4790131 30 100.0 31 .............................. CGCTCAAGGCGTACCGCGTGCCTACCCGTCA 4790192 30 96.7 31 .............................C GCACCGTGTCCACGAGAACCACAGCCCGCCC 4790253 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== =============================== ================== 6 30 97.8 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : GCTGTGGAAACTGGCCCGTCCAGTACTCCACGTGCCCCAAAACCAGGACGGACAGTGTCAATGGAGCAAAAAGGGAGAGACCTTGACCGGTGGCCGTGGCCGTACGAAGGGCCGGGTTGACCGGCCCTGTGGCACTCCTGGGGGAAGGAAGGCTGTTCGCCGACTCCGGCACGGACGCAGTCCTGGCCGCGTCTGGGCGGTACGCCACAGGGGATGGCCAGCGCTCCGGAGGAGAATGCGCGGGGCCGTGGCCGTACGAATCTCAGGCCGTGCGTTCACGGGCGGGATTCCTGTCCCAGTTGCCGCCAGGCATCGGAAGTCGGCGTCCTGGTCTTTCACGACGGCGCGTGGTGTGCTTTTCTCAGAGGCCAAGCAGAGCGAGTGCTGCTAGGGCATAATGGGGTGTTTGGGTTCAAATAAGGCCTATGGTATTTGTGTCTAGTTTTCGAGAAGTTGGAAAATCGGCTGCTTGCCGCTGGTAAGTTCGCAGGTCGTTGACT # Right flank : ATCGACGTACAGTGCGGTGCCTTCGGGAGCGGTGCCGCGCTCAGTCCGTAACCGTCGCCACGAATTCCTCGCGCTCTCCCGGATTCTCGGACCGGACGTGCTCGGACAGCTCCACGAAATCGATGTCGGGGAACTCGATGCTCTCGTCCCCCTCGTGGTCCGTCGGCATCTTCGTTGTGAGGGCCGAGGCGACGCCGTCGGTGATCCTCGTGCGCTCTGCACCGACTCGGAACCCGTCGAGGATGTGGCGATGACGCTGGGCTCCTCAGGGCCATCGTGCTGGTGCGTGGTCGGGGGCAGCAGGGGGCGGATCAGTTTCCACTTTTCGTCGGTGAGCTTGGATCTGCGGCTCGTAAACCGGTTGTACATCAGCGTTGAGAGCCACAGAGTCGAAACTCAAGATCCACGGAATACGCCCTAGCCCAGATCTCACAGTCCATAAGGTGATCCCATGACGTTGTGGGAGTTCGCTCTATGGGGCCTAGCCGGAGCCGGATGCG # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //