Array 1 20322-20688 **** Predicted by CRISPRDetect 2.4 *** >NZ_LATY01000017.1 Alkalihalobacillus clausii strain UBBC-07 contig_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 20322 32 96.9 35 ..........A..................... GAAACTTTTTTAGCCATAATGTCCCCCTATTTTAT 20389 32 100.0 33 ................................ GATTAAGTCTTGCAATCCAGATTCCACAATGAT 20454 32 100.0 36 ................................ AGGGAGACACCTTCTAGCATTATAGATGGTGGAAGT 20522 32 100.0 36 ................................ ATGCCTTTAACCTTGTACGCATTAAAGGTCGGATCA 20590 32 96.9 35 ............A................... AATAAATGGTCTGTAGATGATCTGTACACATCTAT 20657 32 78.1 0 .G.........C..........C.CA.A..C. | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 95.3 35 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : ACAACTTGAATTAGAAACATCGTCGATCCCGATCATAGTAAAAGGGAGTTTATTAGAGAAAAACGAATTTGTGCGCCACCATTTTGCCGAAAAACTAAAACAATGTTCAACTGGCATTTCGATTGTTTGTAAAAACCGACCAACCGTAACAGGCGCTTTGCATGCATGGAAGAATTCAAACCATGATTAAATAGGACCAACTTTTGTGCCCGGGCCGCTTCTTTATAGGTTAACCGTTTCAAGAGACAATGTTTATGATTGGACCCCAAGGGAAGCGATCACCTCCTTTCAAGGAGAAACGAGGACAACGAACATTCAAAGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAATGGCCTTAAATATGTGTTAAAATGTACAAAGATGTAATAATATGGTCTAATTTGCTGTGCTATGATAGAAAATAGAAGCGAAATCAATCATTTTCGGTTGTTTATTTTCCGGAAAATGGGTAAATGTCGCT # Right flank : TAGGACAAGCCTCACCGCTTGCTGCGAAAAGTCTTGTCCTACTCAATTCGAGTGCATAATACGTTTCTCTCACTAGATCAGCAAGTGCATCACACCTATAAATACACGTATTTAAATACAAAACTAGAAAGTAAAAACCAATTAAGGGAGGAGTAAACAATGGAAGAGAAGGAATTGTTAGAGCTCTTGTTACAGAAGGTAACCGATCTGGAATTGGGGTTGAAAGAGCAAAAAGAGCACAATGCTGCGGTTGCAAAAGATTTAAAAGAGCAAAAAGCGCATAATGCCATAGTTGCAAAAGATTTAAAAGAGCAAAAAGAGCACAATGCTGCGGTTGCAAAAGATTTAAAAGAGCAAAAAGCGCATAATGCCGCGGTTGCAAAAGATTTAAAAGAGCAAAAAGCCTATAATGCAGCATTCGCCAAAGACTTAAAAGAACAAAAAACGCAAATTGCTGGGATCACAAAAGAACTAAAAGAGCAAAAAGAGCACTACTTGGC # Questionable array : NO Score: 9.02 # Score Detail : 1:0, 2:3, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 68733-69094 **** Predicted by CRISPRDetect 2.4 *** >NZ_LATY01000017.1 Alkalihalobacillus clausii strain UBBC-07 contig_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 68733 32 100.0 35 ................................ CCGATTGGATGAAAAAGGCGGGTAAAAGGGTCCCT 68800 32 100.0 33 ................................ TCTACCGTGATGACTACTACGACAAAGAGAGCG 68865 32 100.0 33 ................................ ACGCCTTTGCGACCAACGGCACCAAGCAGGGTG 68930 32 100.0 34 ................................ ATTAATCTTTGTATTTATGGCTTGATGCGGCGAC 68996 32 100.0 35 ................................ CTTTTTCAATTTCGTAAATCCTGGCTAGTCCAAAA 69063 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 6 32 100.0 34 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : ATGGGCATTCCAATCATCGCGATTCAAATATTGACGATTATCGCCGCCAAAAAAATGATGGACGAAGACAAAGCATGGATTAATAACGTTAGAAAAGAGAAATAGGAAAGGGCAATGCTGAGCCTGCCGGCTACTTTTGCTGGCAGGCTTAAGCTTTGTATTTTTGGGGAAACGCGAATTTATGAATGGAAGTTAGATTTGCGGAATTGGCGATTGCTTGTAAAGAAAGGCATCGATTTTTAATCTATAAAAATTAAAGGCGAAAACATGATATAATTTTTTGTAGACTAACACAAATATAGCAAATAGCCGATTTTATAGTGCGAACCCCTAGCACACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTTAAATATGAGGAAGTGTGTGTAAAAGTGGTGAAATGTTGTTGGTTTCCCATGATATGATAAAGGAAAAGAGCGGCTTTTCTCTATTATTTGTGGTTTAGATTCCAGAAAATAGGGAGATTTGACT # Right flank : TGTATTTTCAATTCGATACAAAAAAAGCCTCGACACGAAAATGCCGAGGCTACAGTTTTTAGAATGGTATATCACTTTTGCCTATTGATTTAAAAAAGGTACATTAACTTCGCCCGCAGTTTTAGCAAAATTTGGCGAGGATAAAATGGCAACGATGGCTGACAGTTCATCCTACTATTTGCTCGAACGGGCCAACGCCCGTTTCTGAAAGATAGTGTTAACAACAAGGGAACATGCTATAATTGAAGCACAATAGCATAACGGTTTACTCAAGGGTGGTCGGCACACTCCCATGAAAGGGGGTGTTGCTGTATGACAGTATTTGAAGGAATTTCCCTTATGTTGACGTTCGGGCTACTGATCGTTGCATTGCTGTCGTTTCACAACCATAAAAAATAATCCACCCTTGAGTTAGCGGCTCAGGTGGATTATTCGTCCAATCGGCCGATCCCCCTTGCAGGGAACCGTGCTATTGTTTGACTGAAGGTGTACCAGCACCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 80584-80748 **** Predicted by CRISPRDetect 2.4 *** >NZ_LATY01000017.1 Alkalihalobacillus clausii strain UBBC-07 contig_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 80584 32 100.0 33 ................................ CACAATGAGACAGCCATACTCTCCTCCTTATTG 80649 32 100.0 36 ................................ TGTAAACTGTCCGTTGCCGACTAGACAAATGTGATA 80717 32 93.8 0 ....T......A.................... | ========== ====== ====== ====== ================================ ==================================== ================== 3 32 97.9 35 GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Left flank : CGCCACAAAAGAAAAGTGCCTCCCACGAGAAATTGATGTGAAGCACTTGCAAGACACGTTGGTGGATCAAGGGGCGATATTGAGCTGACATTTTCGAATAAAAGGATTTGCAATGGTGCTTGAAGATGGACTACCTATAAAAATGAGACGAACAAGAAACTCCAAACATTGGGTTATGGAGTTTCTTTTTTTAGGTGTTCGTGGTATTAAAATGGGGTGGGATTAGAAGGATAGGTGGGAGCAACGGTTTAATTGGGTCAACCTAAAGAAGTTTGCCATTGAACATTAACGCCGTCGAAGACAAAAGCTTAAATCAGACGGTGCGAACCCCAAGCGCACATAAAATTACTAGATCACCCGCACCAAAATAGAGCGCGAATATGAGCTTATGTGTATAAAGATGTGAAAATATGGTTCATGTTCCTTGATATAATGAAGGGAAAGCGCGACTTTCCTATATTATCTGTGGTTTTATTTCCAGAAAATAGGGGAATTTCGCT # Right flank : TTTGCTTCCGGCGAACGGAATGTGGCTTTCTGCTCGGCGCACTTTTTATAACTGCGCCAATTAACATCCACATGAATCGACGTTCACTTGCGAAACGACTAGTCATGCAAAAAGCAAGTCCGAAAAACCAAATAAGCAATATAGGCGCACCGACGCCCATATTGCTTATTTTCGTTTTTATTGTCTATTTCAACGCTGGCCAAAATGCTTTATTCGCTTCGATTAAGTCGTCTAGTATATCTTTTGCTACTTTTGCACTTGGCACGGTTTTCGATAATGTGATTGCTTGCCATAACTTTTGATAGGAACCTTCTTCGAATGCTTCTACTACTAGTTTTTCGACGCCAACTTGTTGCTCCATTAGGCTTTTTTGGAATCTAGGGATTTCTCCGACAACCAGTTTTTCGGGGCCGTTGCTGCCGACGATGCACGGGATTTCTACCATTGCTGTTGGGTCGAAGTTCTTGATGGCGCCATTGTTTTCGACAATCATTAACATC # Questionable array : NO Score: 8.26 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.80,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 87182-87478 **** Predicted by CRISPRDetect 2.4 *** >NZ_LATY01000017.1 Alkalihalobacillus clausii strain UBBC-07 contig_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 87182 32 100.0 34 ................................ CACCTCACCTAATCACAGCAGCAGGCGCCTACAC 87248 32 100.0 33 ................................ TTCAAGAAATCTAATGTCATAGCTATTTCTAAA 87313 32 100.0 36 ................................ GCTGTCGTAACACGCCTTAAATGCCGTCATATCAAT 87381 32 100.0 35 ................................ TTTCGGTAGTAAGTACGCTCACTTATACCCATTTC 87448 31 93.8 0 ............A.........-......... | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 98.8 35 GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Left flank : CAGAAGAAGAGGAGGCTCCGCTGGCGGTATATCTTGCTTCTTTTAAGCGAACGAATTTGGAGAATCTACTAAACGAGCTGGAAAAGGCAGCGAACCTGCCCGCGTTTCGAACCAATCTGTTTGAACATTAATGGGGTGGGGGCTCATGACGGAGGCATTCCTGTGATCGAAGCATGGACAAAAAACACTACGAGACGATCCCCTCTAATCGTGGCTTTCGGTCATCTACCAGCTAAAAAAATGGTTCGTTAAAAAAATGTTGAGGTAACTCATGGGTTGTTTTTCAGTTTTAACTTCCATCCCAAACACCTACCATTTTGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGCACTCAAATATGGTTAAATGTGTGAAAAAGTGTTAAAATGTTGTTCGTATCCCATGGTATGATAGAGGAAAAGAGCGATTTTTCTCTATGATTCATCCATTAGTTTCCAAAAAATAGGGGAATTTCGCT # Right flank : TACAAGTTTTTATCCGATTTTATTTTGGAATCGATGTCGCACTCCTTACGAGTGGCTTGTCTAAATAGGGTCGCGAGCAGGCCCTACCGCGCTGTTACCCCAGCCTGCTCGCGGAAAATCCCTATTTATGCAATCTTGCAATTTCCATGCTTGGCGAAATGGAGCGACCGTTTTTATTGCTGTGATTCGTGTTAATAGAAAAAAGGACTAGCTACAGGAGGAAGCGAAATTGGAAATTCGTACAGTGAAGGGCTCTGACTACTATGTCATTTCCCCACTAATTAATAAGTGGTGGGGTGGAAGGAAGATGTCGGATAAGTTACCGAAATTATTTTTCGACCATTTTTCTAATACAAGTTTTGTTGCTGAAAGGGATGGAACACTTGTCGGCTTTCTAATCGGATTCTTTTCTCAATCTCATCAAAAAGTAGCCTATATACATTTCGTTGGTGTCCACCCTGATTATAGAAAGCAACGTGTTGGCAACCTATTATACAATC # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 145028-145391 **** Predicted by CRISPRDetect 2.4 *** >NZ_LATY01000017.1 Alkalihalobacillus clausii strain UBBC-07 contig_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 145028 32 100.0 34 ................................ AAGAGTGACTAAATAAATTGCCGCTAGCAACACA 145094 32 100.0 34 ................................ CTCTTCCACCCACTGGAATTGTATAATTGACGAC 145160 32 100.0 35 ................................ GCTAAGGCCGTGCAAGTTCTGGTCTTTACGGATGT 145227 32 100.0 33 ................................ TTTATGAGGTAGTTGCGGATAGTATTTTAAAAC 145292 32 96.9 35 ......T......................... TATTAAGTCTGCAATAGGATGGTCTTTTTCCCTAC 145359 32 93.8 0 ..............................TC | A [145385] ========== ====== ====== ====== ================================ =================================== ================== 6 32 98.4 34 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : TTCCGCGGTGAATAAGATAATGAATGGTGTCGGCATCGTTCTTATTTCAGGCTTGCTTAACTATCCATTGACGTACCTGCTAGGGACTGAAAAATCGGATGGCATCCTTGTTTTTAGCATCATGGCTGCAGTCGGGTTGTTTTTACTAAGTTCTTGGCTATTTGAAATTTTTCTAGGCGCTGTTTCCTTTGATGCACTACAAGGGATGAATCTAGATAAGCTGTTCTCTGGAAGTTTTTTAGCGGTCACGTTTTTGCTATTCATGGCCTCCTACGTAATTGCACTGCAAGTGTATAAAAGGAAAGAATTCTAAGCGAGTAGGTGCGAACCCCAAGCACACATGAAATCCCAGGGAGGTTCGCACCAAAATCCACTTTTAATATGTAATAATGTGTGTAAAAATGGATTAATGTGAGCGGAGCCGCATGTTAAAATAGGAGAGAAAAACGAAATTCGCGCTTTTTTGGATGTTTCATTCCATAAATTCGTTGAAAGTCGCT # Right flank : CGCGCTCTTCTCAGCTGCCAAACGTTGGTAGTCGCACTCTTCATGCGTGCACACATGAAGAGAAGAACGCCCGGTTAGACTGAATCATCACCATCTATACAGCAGCCAAAACCCTTATTTTACAGCGTTTTGGCTGTTTTTTTATTTATTTTGTTGGGCTGCTTGACAAGGTATGGCTATGTTCTGTAAAGTAGTTATAACACTAACTACTTAGAGGTGCTGATATGGAAGAGGCAGTCATTCAGGAGCTGCAAAAGCACGGTTTTTCCAAATATGAGTCAAAAGCGTATATTGGGTTATTAAAGGCGCCTGCGATTACAGGTTATGAATTAAGCAAGCGCTCAGGAGTGCCTCGGTCGATGATTTATGAAGTGCTTGGCAAGTTGCTCGATAAAGGGGCTGTGCATACCGTGCCCGCTGACCCAATTGTCTATAAGCCAGTGGACCCGCGGCAGCTATTGACGAAAATGAGGGAAGATCTTGATGCTTCTTTGACCTCA # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //