Array 1 738-2423 **** Predicted by CRISPRDetect 2.4 *** >NZ_APUC01000062.1 Neisseria meningitidis 2004032 gnm2004032.contig.61, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 738 36 94.4 30 ........G...A....................... GCGGAACGGGTTGACAGACTGAATTTGAGT 804 36 97.2 30 ............A....................... ATCACTTTTAAAGGCGGCATCGGCTGGTTT 870 36 100.0 30 .................................... AGGGGTCGTGAATGGAGTTCTTGCAGTTCG 936 36 100.0 30 .................................... TAAGCGTTTCTTTTTTGGTCTGCTTCTGCT 1002 36 100.0 30 .................................... AATCAGACCGACTTTACAACGAAGGTTTGA 1068 36 100.0 30 .................................... CGACAACAAAGCCGTCTATGACCTGACCGA 1134 36 100.0 30 .................................... CACCCTGATATTCCGCAACTCGATATACTG 1200 36 100.0 30 .................................... TTGGGAGGTGGAAAACCGAATCCTGCACGA 1266 36 100.0 30 .................................... TGCTACCAGCGACAACAGGCATTACGCCCA 1332 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 1398 36 100.0 30 .................................... CTGATGAAGATACAACCGCACTAACTTTAC 1464 36 100.0 30 .................................... AATGATGTATATAAAATGCCGTAAAAAATG 1530 36 100.0 30 .................................... CGTCTGAAGGTTTGCCCATCTCCTGACAGG 1596 36 100.0 30 .................................... TCGATTGTCTATGAAAGCACTTGATGATTT 1662 36 100.0 30 .................................... CTCTTCATTGAAGAAGTTATAAGCCTTTGT 1728 36 100.0 30 .................................... AAATCCATTTATCGCCCACCCTTTCCGGCC 1794 36 100.0 30 .................................... CTCTTCATTGAAGAAGTTATAAGCCTTTGT 1860 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 1926 36 100.0 30 .................................... GCCTGCGTACTTGGTACGCTGGTCGCCTCC 1992 36 100.0 30 .................................... TTCATAGATCGATGCATGAGGTTTTCATGG 2058 36 100.0 30 .................................... AGGTCAAAGTGTCAGGCAAATTTAAAGGTG 2124 36 100.0 30 .................................... AAATCCATTTATCGCCCACCCTTTCCGGCC 2190 36 100.0 30 .................................... TGTAAATGAGGTTATTGAAGATGCAAAAAG 2256 36 100.0 30 .................................... TTTTCCAAAGCGTAAAATCACATTCGGGGC 2322 36 100.0 30 .................................... AACACTGATAGGGAATGTACCCTCGATAGT 2388 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 26 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTTATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //