Array 1 19648-18358 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGAR01000012.1 Neisseria meningitidis strain NmSL14x1 NODE_12_length_50542_cov_41.7177_ID_45207, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 19647 36 94.4 30 ........G...A....................... TTCTATTATAAAAGCTGCCTGACTTACTCG 19581 36 100.0 30 .................................... GGCGGATGGCATACGGCGTGCCTTTTCGGT 19515 36 100.0 30 .................................... GAGCATTGACACTATTTGTATGGCGTTAAG 19449 36 100.0 30 .................................... CCGTCACTACACGAACTGGCGGACTTCTTG 19383 36 100.0 30 .................................... AGCATTTGGGCGGCACGGGCAAAGCCGTCA 19317 36 100.0 30 .................................... AATCAGACCGACTTTACAACGAAGGTTTGA 19251 36 100.0 30 .................................... TTGGGAGGTGGAAAACCGAATCCTGCACGA 19185 36 100.0 30 .................................... AAGCAAATCATTTTCATAGTCAGCAGCTTC 19119 36 97.2 30 ......................T............. ACGTGAGTTTGTCTATGAGTTCGACGGCGT 19053 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 18987 36 100.0 30 .................................... CTTTCACTTCAGTAATGGCTTCGGCATATA 18921 36 100.0 30 .................................... TAAATTTTTGATTTTGATTTTTTCTATACA 18855 36 100.0 30 .................................... GTGGGAGTTCGTCTATGAATTCGATGGCGT 18789 36 100.0 30 .................................... TTTGCTGCCCGACAATGCGCGTCCGCAGAT 18723 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 18657 36 100.0 30 .................................... TTCCAAAGTTTTAATTTATATTATTTTAGT 18591 36 97.2 30 ............................A....... CAGAAGATGATAACTGTGCTGGGGGTGCGT 18525 36 100.0 30 .................................... ACGCAATAACGGCGAGTTTACGCATCAATG 18459 36 100.0 30 .................................... TAACGATTGAAAGTGAGTATGTATTAAGTA 18393 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 99.4 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGATATTGTGCTAGAAGAAACAGAAAACGAGCAGAACAATGATTTCAGGCTGCCTGAAAATTTAGAACACTTTGATATTCAAATAGAAAATGTTTCTTTTCGCTATGCTGAAAATGAACCATACATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGATTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTGTCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //