Array 1 15547-15215 **** Predicted by CRISPRDetect 2.4 *** >NZ_AURO01000033.1 Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN002061 CFSAN002061_90, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15546 28 96.6 32 -............................ TGACGCTGGTCTATACCGGCAACGAACGCGAC 15486 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 15425 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 15364 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 15303 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 15242 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 96945-97583 **** Predicted by CRISPRDetect 2.4 *** >NZ_AURO01000116.1 Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN002061 CFSAN002061_38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 96945 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 97006 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 97067 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 97128 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 97189 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 97250 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 97311 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 97372 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 97433 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 97494 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 97555 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : AATTATTTCTGTGGCTGGGGTTTCGATTCGATGTGTTCCCCGCGCCAGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1463-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_AURO01000136.1 Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN002061 CFSAN002061_107, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 1462 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 1401 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 1340 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 1279 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 1218 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 1157 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 1096 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 1035 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 974 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 913 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 852 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 791 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 730 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 669 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 608 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 547 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 486 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 425 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 364 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 261 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 200 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 139 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 78 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================================================== ================== 23 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GGCAACCCATTAATTAACTAAGCAGTAATAAACGTGTTCCCCGCGCCAGC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //