Array 1 2729423-2728395 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP007583.1 Listeria monocytogenes strain XYSN chromosome, complete genome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
   2729422	    36	 100.0	    30	....................................	TAGATAAAGCCAATAAAAGGTGGACACCCG 	
   2729356	    36	 100.0	    30	....................................	TTAGTTTATGTGCCCCTAACCTCACAGTTA 	
   2729290	    36	 100.0	    30	....................................	TAAAGCTATTCTTTATGAACGTTCAAGTTT 	
   2729224	    36	 100.0	    30	....................................	TGCTACCATCGCAGAAGTAACAACTGTCAT 	
   2729158	    36	 100.0	    30	....................................	TTTTTACGACTTCCGAACAGGTCGAATGTT 	
   2729092	    36	 100.0	    30	....................................	TACACCAATCGCGCTTGATGCTGTCGCGCT 	
   2729026	    36	 100.0	    30	....................................	TGGAGCCCCGCCCGGCAATACTAATGCAGT 	
   2728960	    36	 100.0	    30	....................................	AATATGTGAGAAGTTACAACACATCATCGA 	
   2728894	    36	 100.0	    30	....................................	AAAAAGTCATAATCGGAATTTGCTTTTCTT 	
   2728828	    36	 100.0	    30	....................................	TTCAAAATTTAGAAGAGTTAAAGACTTATT 	
   2728762	    36	 100.0	    31	....................................	CTTTGCAGATGCTAGTCCTCGAAGTGTATCA	
   2728695	    36	 100.0	    31	....................................	TTGGGGACATTAGTTATATTCCCACACAGGA	
   2728628	    36	 100.0	    30	....................................	ATTATTTTATGTTTTAGATTAAAGCCGAAT 	
   2728562	    36	 100.0	    30	....................................	TGGGTGAATGACGAACGATGGTGAACCCCC 	
   2728496	    36	 100.0	    30	....................................	AGAACAACTACAAAACCAGCTTCTTGAGCG 	
   2728430	    36	  75.0	     0	............CA.....C.....A.C.A..C.TA	|                              	
==========	======	======	======	====================================	===============================	==================
        16	    36	  98.4	    30	GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	                               	       

# Left flank :   GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG
# Right flank :  GAGACAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAAACTATCTACATGATACAGTATTACTATCTTGCTTCGAAGTCGCTCTTAGAAAAAGATGGAGAAAAGTTTCCTCATCTCTATATATAATAGAGTGGCTTAGACTTCTTAAATTCGAATTTTGAAATGAATGTTGACCAAGATAAAGGTATAAATAAATTGTTTCCCTATTCAATTAGTTTCAACTCAACTTGCAAATTTCAAGTTGCTACAAGCAAAGGGGATATACTGCTGAAAGTTGAGGAGCAAAATAATTGTTACGAGACCAAAAGTTTAAAAATTTTATATGATTATATTCTAAATGCGAGTAAAAATAGTGAAACGCTTGAACTATATACTGTTTGGAACAGCGAGAAAGATTTGCCGTTAACGCACAAACCAGAACTGTTTATAGAGAATTTAACTATAGTAAATCTAGGTTTATGTGACAGAGAGCTATTAGTAATTAA

# Questionable array : NO	 Score: 6.18
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:69.44%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-0.80,-1.30] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [9-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,5.28   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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