Array 1 257214-258858 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEGS01000024.1 Pseudomonas aeruginosa strain Pae_CF67.08h CF67.08h_contig_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 257214 28 100.0 32 ............................ TGATCAAGAAGAACCCGATGGCGCCACTTGAG 257274 28 100.0 32 ............................ ATCCTATCGACGACAAAGTGCTCGAGCATCTC 257334 28 100.0 32 ............................ TGCCGGACCTGCTCCGCCACTGCGGACTCCAA 257394 28 100.0 32 ............................ AGAAAGCCAAGATCTACCGCTGGAGAAAGGCG 257454 28 100.0 32 ............................ GAAGAACATCGCTGCGGCGATCTGGGCCTCGC 257514 28 100.0 32 ............................ AGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTC 257574 28 100.0 32 ............................ AGGAAACCAGAGCAGGAGGATGGACTATGACC 257634 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 257694 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 257754 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 257814 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 257874 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 257935 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 257995 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 258055 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 258115 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 258175 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 258235 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 258295 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 258355 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 258411 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 258471 28 100.0 32 ............................ TCTGTCACCTCCTGGGAGGCGGCCTCGGCCTG 258531 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 258591 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 258651 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 258711 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 258771 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 258831 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 269082-267733 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEGS01000024.1 Pseudomonas aeruginosa strain Pae_CF67.08h CF67.08h_contig_24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 269081 28 100.0 32 ............................ CAAAGCTCTGGTGTGGTTTGCTCGCACTCAAC 269021 28 100.0 32 ............................ GTCTCGCGCACATGCGGAAACCAGCCGGCACG 268961 28 100.0 32 ............................ GATTCGGGGAACTCAAGCCGCTTGCTTTGCAT 268901 28 100.0 32 ............................ TGCTGGCGCTGATCAGTTGGAAAGGGCTTGCT 268841 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 268781 28 100.0 32 ............................ AATGGCAGCAGCGCGAAAAGCTCGCGGAGTTC 268721 28 100.0 32 ............................ TCGCCGATCAGCAAGATGGAGGCTTGGCTGGA 268661 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 268601 28 100.0 32 ............................ TGGAAGAACGCACTTGGACGGTCAGCATTGGC 268541 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 268481 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 268421 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 268361 28 100.0 32 ............................ GTCCAGGCACGTTTGCTCGCGCTTTGATCTCA 268301 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 268241 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 268181 28 100.0 32 ............................ TTCTGCGCAAGTTGTTCCTCGGACATCCCCGG 268121 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 268061 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 268001 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 267941 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 267881 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 267821 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 267760 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGATCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCACTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCTCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //