Array 1 152-1327 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXRZ010000026.1 Microbispora camponoti strain 2C-HV3 Scaffold22_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================================================== ================== 152 28 89.7 32 .....T.......C...-........... ACCATCGGCCCATGAATGCACGTCTTCCCGAT 212 29 93.1 32 ......T......C............... AACGGCGACCGCCGCTTCGACCCGACGGACCT 273 29 93.1 32 ..............T.......C...... GAACCCCAGCATGAGTGACCTGCACGACGCTT 334 29 86.2 32 ..........G....A..A......A... CGCAAGCCGAAGCCCGTTCCGATTCCGGCGAG 395 28 86.2 32 ..T..-.TT.................... AACTGCACCTCGTCGGTGCCGATGCCACCGGC 455 29 89.7 30 C......T.......A............. ATGTGGCAGGGAGCTGTCCCTGACGTCCAT 514 29 93.1 32 .......................A..T.. GGGATGGTAATGAGGAGGGCGGGGAGAATGAA 575 29 93.1 32 A..A......................... GCCATCGCGAAGGCGATTTAGAACCAGCAGGA 636 29 96.6 32 ........................C.... ATGACCGCCACGGTCACGCAGCGGGTCATCGA 697 28 93.1 32 .....-........T.............. GCGTTCGCGCCCTCCCTCCGGGTCGGTCCGAC 757 29 100.0 32 ............................. TCCTCTTCAAACGGGACCTCGGTTGCTGGTCG 818 29 96.6 32 A............................ GCCTCGGCGTCGACCTTGCTGCGTTCGATCTC 879 29 100.0 32 ............................. CACCACGAGTTCACGCTGCCTGCGTAATAGCC 940 29 100.0 32 ............................. TGCGGCGCCACCAAGATTCGCCCTCGCTGACA 1001 29 93.1 86 ...............T..........T.. TGGGCCGTGACCACGGTGGAGGCGCACACACCGTCCTCCCCCTGGGGGTGAGTCGCGGTGGCCCTCTTGGCCGTGGCGCTGGTCCC 1116 29 89.7 31 ...........A...............GC CCGCCAGCGCACTACGTATGGTGTCCCTGCC A [1117] 1177 29 96.6 32 ............................T GTGAACCGGCCCTTCGGCTTGTCTGGGGAGGT 1238 29 96.6 32 .............G............... CAGGGCTATAGCCAGGGCTGGAGCGCCCTGTC 1299 29 96.6 0 .....................A....... | ========== ====== ====== ====== ============================= ====================================================================================== ================== 19 29 93.8 35 GTCCTCCCCACGCACGTGGGGGTGAGCCG # Left flank : CACGGACAAGATCAGGAGAACAACCTGGCCATTGACCAGGATTTTTGATGGCCGCCAACCGGGAACCGCTGTCCGTCAGCCTCGACTTTTCTGTCCGCTCAACAAGACTTCCACGTGACCGCTCTCACTTGGTCAGGCCCAGCGCGCGGGCG # Right flank : GGCCCGCGAACTGTGGTTCGAGGCACGCATCCCGTTTGACGGCGGCGCTCCAATACTGGATCAGGCACACTTTCCGTGACTGGACCCTGGTCAGTCGGCCAGCAGGAGGCGTTTGCGCAGGAGATCGGGGTTGGCGCGGCCGTACATCTGCCGCTTGAGCATTTTGGTCCGGTTGACGTGCCCTTCGACGGGCCCGGAGCTGTAGGGCAGGGTGAGGCCGGCCGTGACCGCGTCTTGGTCGCGGCGTAGCCCTGTGACGAAGGAGTGCAGGTCAGGCAGGTCGTCGCGGAGTACCGCGTTCATCCATGCCTCCAGGTCCCGGCCGCGGCGGTTCATCATCATTTCGGCGAACTGGCGCACGTGCCCCCGGAGCGCTGCCAGCTGGGGACATAGGGCGGTGAGTGTGTCGAGCTGGCGTTGCTCGCCGGGTTCGAGGCGGGCGGGGTTGCGCAGGAACCAGCCGGTAGCTTGGCGGACCGTGGGCGGGCGGGGCGAAGCCG # Questionable array : NO Score: 4.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:-0.21, 8:1, 9:0.24, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCCCGTGGGGGTGAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4192-3307 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXRZ010000026.1 Microbispora camponoti strain 2C-HV3 Scaffold22_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4191 29 100.0 32 ............................. TCCTGAAGGGCCTTGGCGCCCTCCCGGGCCAG 4130 29 100.0 32 ............................. GTATCGGGTGGCGCTGGAGCTGGGGTGGTCCA 4069 29 100.0 32 ............................. CATGGTCGCTGCCCGAGGATGGCTGGCGCTCG 4008 29 100.0 32 ............................. CCGACGGCGCGGGACGTCGGGCACGGCTTTGG 3947 29 100.0 32 ............................. GCCCTGATGAGCTCGAGACGGGCAGGTGAACC 3886 29 100.0 32 ............................. GCAGCCCACGGTGAGACCGTGGACCTGGGCGT 3825 29 100.0 32 ............................. CAGGCCCTCCCGCTTGAGCACGTCAAGCGCCT 3764 29 96.6 33 ............................T TCGGAAGGACATCTGTTGGCAGCCTCGCCCCAC 3702 29 100.0 32 ............................. GCGTTCAGGACCTTGGCGATGGTGTCGGTCTT 3641 29 100.0 32 ............................. GTCCTCGTCCATGATCTTGCCGGTCGTGATTG 3580 29 93.1 32 .......T..T.................. GCGTAGTCGTAGCCTTCGGACTCGATGGCGTT G [3558] 3518 29 100.0 32 ............................. CAGCCCCCGGCGCTGAACACGGCCCAGACGTT 3457 29 100.0 32 ............................. CGGGCCCTCGCGGAGACCACCCCTGTGCAGGC 3396 29 100.0 32 ............................. CCCGAGCACGCGGCCCTGTATGGCCGCTGGGG 3335 29 96.6 0 T............................ | ========== ====== ====== ====== ============================= ================================= ================== 15 29 99.1 32 GTCCTCCCCACGCACGTGGGGGTGAGCCG # Left flank : CGCATGAAACAAGCACGAACCCGGACAGGCGGACGCGTCACCAAGAAATAGCCAACTACGACGGCACGGGGACCTCAACCTGGCCACCAGCGGTGACACGCACCCGGCCGTTGACAATCTCTGACTTCGACACCGCGGACCTGGAGTAGCGCCCATGGCCTCCATGGTCGTCATCTCAACGACGGCGATCCCCGATCACGTCGGCGGTGCGCTGTCACGATGGCTCATCGAGCCCACCCCCGGTCTCTACGTGGGTACCGTCTCCGCCCGGGTCTGAGACGAACTATGGTCGGCCGTCAGCGCGAGCGTGGGTGACGGAGTGGCCGTGCTCATCCACCCGGCCGACACCGAGCAAGGGTTCGCCATCTGCACCGCCGGACAGCGCCGCCGGCATGTCGTCGACTTCGACGGTCTACAGCTGATCAAATTCGCCGCCATGGAGACGGAGATACATGCCTCGGAAACCTCAAATGCGATTGTGAAGTAGCAGGTCGGGAAGT # Right flank : TCGAGGACCTGGATCTCGCCCTGCGGGAGATGTCGGCCCTTCGCCAGGTCGACGCATCCGTGGCTGATCAGGAGTGCCTCGTCCTTCGGGTAGCTCGGCATCAGAGGGGTAACCGTCAGCCCACGGCCCCTTTCTCGCGCATTCCGGCCGCACCCGTTGTCGACGACGCGTGAAAACTGGATCAGGCACACTTTCCGTGATCGGGCCACGGCTGAGCTGATCACGATTCAGGCGTTCTAGCCAGTAGCTCGTCTTCCGATGGTGACGATCTGCGGCGTGTTGATCAGTGAGATGGTCGTGGTCTTGTTCCCCCACCTGGCCCGCGTGTGCATTGACCAGGTGTTTCGTGCGGGAACGACGGTGCGGATCCGGGCCAGGACCGACACCATGGAGGCCGCGTGCCCGGACTGCGGGACTCGGTCGCGGCGCAGGCACAGTCACTATGAACGACGGCTGTCCGACACCGCAGTCGGCGGCCAGGAACTGCTCATCCACCTGCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCCCGTGGGGGTGAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 8518-9074 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXRZ010000026.1 Microbispora camponoti strain 2C-HV3 Scaffold22_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8518 29 96.6 32 A............................ CAGCCCCCCGCGATCAACACGCCGCAGACCTT 8579 29 100.0 32 ............................. CCTGAGGCGCTCAGGCTGGCGCGGGTGCTCGG 8640 29 100.0 32 ............................. CTTCTTGATCGCGTCCAGCTCGCGCCGATAGC 8701 29 96.6 32 ......T...................... CACCAGCGGCACGACCGGCTGATGGAGCTGCC 8762 29 100.0 32 ............................. CTGAGTTCGTCAGGCTGATCGACCCGCCAGAG 8823 29 96.6 32 ........G.................... ATACGGCGACCGCGGAGGGGGACGATGCCGCC 8884 29 100.0 32 ............................. GATGCTGTGCGCCACAGAGTTAATCGACTCGC 8945 29 100.0 32 ............................. TACTGGGAGTCCGGAGCTGGCGACCCGGAAGA 9006 29 100.0 11 ............................. TGCGCTGAGCA G [9023] Deletion [9047] 9047 28 72.4 0 .A.......G.C....G..TC....-..T | ========== ====== ====== ====== ============================= ================================ ================== 10 29 96.2 30 GTCCTCCCCACGCACGTGGGGGTGAGTCG # Left flank : GAGCCCGTTGCGGGCCAGCACACGGTGCACCGTCGCTCGGCCCGGCACCCGCTCCAGATCACACGCGCCGAGCTCATGGGCAATCCGCTGAGCGCCCCACCGGGGGTGCTGCCGTCGCATCTCGCAGATCAACGCCTCGATCTCAGCCGGCAGGCGGGTCGGGCTGGTGCGGGGCCGCCGCGACCGATCGGCCAGCCCCGGCATGCCTTCTTGCTGGAATCGCTGCCGCCAGGTGTGCACCGACTGCCGCGAGGTCCCATACCGAGCTGCGACCTCTCCGATCGGCGAGCCCGCCAGCACCTCACGCACCGCCCGATACCGGTACTCCACCAACGCCTGCTGATCCACGCTCGCCACCCTCGCGGAACCCGACCCGGCCACTTCCTGCAGCGAGCAGGATCCCGCGCGACCGTCAAGCGTGTCTTGATAACGACCGGTTAAGCATGTCCCGAGACCTCACATCGACACAAGTGTCTTTGTGAAACAGCAGGTCGCGAAGT # Right flank : TCTACTCAGGTGGGGGGTGAGCTGTCACACGCCCTGCGACCGCAGCCTAAGCGGAGTCGCTTAACTCAAATCGGTATGGTCCCTGCCCATCCGACCGTCGGTCTTACGGCTCTGGGCTCTTCTGCCCCATAGCAAGCGCGTCCAGCCATACGTGGTTCCTGCTGATCATGTCTTTTTGTAAGGAGCGTACGGAGGACGATGTCCTGAGGAGGCTGGGCTGACGTCCGCTGGCCTCCAAGTTGGTGCTGAAGTTTTAGGACGGACGTCGAGGCCCGCCACTTCGATCGCGCTCAGGTCTCGGGCCTCGAGCCCCGGCCGCAAACGCGCCTGCTCGACGGCGTTCACCACAGCCTCGTTGACCGTCATGGCCTCCAGGCCCAGCCGCGTGGCTGTACGGACGACCTGGCGTGCGACTTGTCCCGACGGCAGGTCGGCGACGATCGGGGCCACGGCCTGCAGAGCGCGCATCCGGTCTTCGGCGAACTGCAGGCGCGGGAACC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.20, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGAGTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCACGTGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 30404-29417 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXRZ010000046.1 Microbispora camponoti strain 2C-HV3 Scaffold41_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================== ================== 30403 28 82.8 90 ..G-.........T..C...........A CAGACGACCGAGATCAGCTGGGCGAACAGGTAGTGCTCCTCACGCCATGGGGCGAGCCGCAGTTCCAACGGTCTGTCTACGCGCTAGGCC 30285 29 89.7 32 T............G...........A... CAGGCGCTCGCGACCCTCTACGAGACCTGCCT 30224 29 93.1 80 ........T....C............... CACTCCTCGGGGGTGCCGTACAGGCCGGTGGGGTCCTCCCCTGAGACGATGGGCATGACGTGTTCCTGAACCTTGCCGAG T [30210] 30114 29 100.0 32 ............................. CGCGTGTGGCGTCTCAACGTCATCGACACCCC 30053 29 100.0 32 ............................. ATCAGACGTACGGAGAGTGATGGAGATGGGCA 29992 29 96.6 32 ..T.......................... CCCGAAACGCAGAAACGCCCGGCCCCGGCAGG 29931 29 100.0 32 ............................. GACGTCGCGGTCACCCTCGGCCCGATCCTGGC 29870 29 96.6 32 ..................C.......... CTGCGGAGCTTCTCGTCATCACTGGTCGAGGA 29809 29 100.0 32 ............................. AACTCCACGCCACCCTCGTCGCCGCGCCGTTC 29748 29 96.6 32 ...........A................. TCGTGCTTGGACACGGGGATGATGTTCGCGTC 29687 29 100.0 32 ............................. CACCGAGGAGGTGACACGTTGCACGTCCACGT 29626 29 96.6 32 ..........T.................. CACGAGCTGGCGCGTCTCCTCCAGGAGATCGG 29565 29 100.0 32 ............................. CTGGACTGCTCCCAGAACACGCGGTCGTTGGG 29504 29 96.6 30 .................A........... CCGCACGGGCAGGTGGCTGAGATCGTCGTC 29445 29 89.7 0 ......T..G.A................. | ========== ====== ====== ====== ============================= ========================================================================================== ================== 15 29 95.9 40 GTCCTCCCCACGCACGTGGGGGTGAGCCG # Left flank : GCGATCGAGTCGGTGAACGCCCGGATCCGCCGGGCGGTCAAGGCCCGCGGCCACTTCCCCAACGAGCAGGCCGCGCTCAAGTGCGTCTACATGGCGATCATGAGTCTCGACCCCACGGGCAAAGGCCGCAAACGCTGGGTCACCCGCTGGAAGGCCGCCCTCAACGCCTTCGCCATCACCTTCGAAGGCCGGCTATCCCCGGCCTCGCGATAGAAGAAATCAGCCGCGAGTTACACCGTTGACTGGACGGACCCCCGATCGTGTCGGTGAGATGGGTACGAGGCGAGGCGCAGTTGCGGACCTGATCAGGATCAATGACGTAGTACGATCCGAGCCCTTCGCAGTCGAATGGATCGCAATGAAGGCTTGCTTGAGAACAGAATCATCGTCATCCGGGCTATCCGGATGAGCACGAGACCCAAGCTTGCGATCGCATCGGCACCGCTAGGCCTGCTTCCAGGATGCGAGTGCGTTTGTAGAAACAGCAGGCCGCGAAGTGT # Right flank : TCGAGGACCTGGATCTCGCCCTGCGGGAGATGTCGGCCCTTCACCAGGTCGACGCATCCGTGGCTGATCAGGAGTGCCTCGTCCTTCAGGTAGCTCGGCGTCAGAGGGCAACCGTCAGCCCACGGCCCCTTTCTTGCGCATTCCGGCCGCACCTGTACGAGGAATAGAGCCGAGGCTGCGCGCGATCACCGCGCCGCACCGCGACAATGCGACCGACAGCTCCACCATCAGCCACTCTGGAAGCCGTCGTAAGCCGAGTCCGCTCACCTGTAGCAGCCGCGTGAGAGCGGCCGCTTGGTCGGCCTTGAGTACGGTCGCGCACCCTGTGTGGTTGAGCACGTCCCGGGCGGCGTAGCCATCGTCGGCCGCTACGGCGCGGATGGTGAGCGTGGTGGCTACGGCGCGGCCGTCCGAGGTGTCGACTCCTCCGGCCGCGTCAACCACTGATAAGCCGAGCCGGGTCCGGAATACCACCAGGCCGGGGGCCGTGTGGTCGAGCC # Questionable array : NO Score: 5.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.56, 8:1, 9:0.63, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCCCGTGGGGGTGAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 40278-41532 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXRZ010000046.1 Microbispora camponoti strain 2C-HV3 Scaffold41_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================== ================== 40278 29 82.8 32 A.....T......T.....A........T TGGCTGGGCGAGGACCTCTTCAAACGGGCTGA 40339 29 82.8 51 C.....T......TT...........T.. AAGATTGGGGTCGAGCCAACGCAGTGGTGTTCTCCACATCGTCACGTCGGC 40419 29 72.4 27 C.G.....T....G..C...AAC...... CCGGGATCAGCGTTCCTATGGATCGCC A [40445] 40476 28 75.9 32 C.TG......T.AC...-........... TTCGGCGGGCTCGGCACCGCAGCGAAGACCCT 40536 29 89.7 31 ...........T.CT.............. ACCTTGGCCAGGACCGGGAACATGATCATAC 40596 29 93.1 32 ...............T..A.......... GACGTCTACTCGGCGATGGCCGGGACGATCCC 40657 29 93.1 32 .............C.........A..... CCGTAGGCCGGCACGTCGTACGGGCCGAGCTG 40718 29 93.1 25 ..............T.........G.... ACGTTGACCACCATGACGCGGCCGC Deletion [40772] 40772 28 79.3 32 CGT..T...........-...A....... AACATCCTGGACATGTGGGCCTCGATCAAGGC 40832 29 93.1 90 ..T.........T................ ATCCAGACCGACGACTCGGCCGACCTGGAGGCGTCCTCCCCACGCCCGTAGTGAGCCGGAGGGAGGTGGTCGGCTGTGCGTGCCCTCGAA 40951 29 93.1 32 .................A...A....... AACGGGACGGACACCGTTCGAACGTACGTCTC 41012 29 93.1 32 ..............T....A......... TGGTGTTCCACCGTGACGAGCATCGGGTCGCC 41073 29 93.1 32 ........................G...A TTCGGCGCTACCCCCGAGGATCGTGCCCGGCT 41134 29 79.3 35 .A......T..T..A..A......C.... AGAAAACGGAACTGGGGGTCCAACCCGGCCTCACA 41198 29 75.9 29 TAT........A..T.........G..A. GGTCCCGTTACGGACAAGCTTGGTCGTTT A,T [41218,41221] 41258 28 79.3 32 .C.T.....C....T.-C........... TCGACGTGCACGATGACCTCGGTCGGCGACCC 41318 29 89.7 32 ........AG..........T........ GACGCGGCGACGCGAGTGGCGTCCTTGCCCCG 41379 29 100.0 32 ............................. GCGACCGGCGAGACCGTTCTCAGCCCGCTCGC TC,A [41384,41388] 41443 29 100.0 32 ............................. GTAGTTTTCGAGTTTTGGACGAACAAAGAAAC 41504 29 96.6 0 ..............T.............. | ========== ====== ====== ====== ============================= ========================================================================================== ================== 20 29 87.8 35 GTCCTCCCCACGCACGTGGGGGTGAGCCG # Left flank : CGTTCCGCCTGGTCGCCAACCCCACAAGAGCCGTAAAGCGCGACGAGAAACAACAGAGCGCACGAGCTGAGCAAGGCAAGCGGGATCAACCGCGCCGGGTCGTTCACCGAACCCCCGAGGCCCAGATCGACTGGATGATCCGCCAGGGGGAACGCAATGGGTTCGTCATCCCAGCGGGCAGAAACGGTCGACCCGACGTCGCATCCTCACCGGCGTTCCGAATGCAGGGGAAAACCAACCTCGGCCATGAGGCGCAGAAAGTTGCCATCGATCACGTCCGCTATGACGGGCATCTGATCGTCACAGACCCGGGCCTCTTCGCGTCGGCCGTGCGAGACGGCATCGGCCGAGGCAAGGCCTACGGCTGTGGCCTACTAAGCCTCGCTCCAGCCCAGAGGTGAGGCAGAGTCCGCTTCTTGAAAAGTGAACAGCTGAACTGGACATACATCCCATGCTCTGGGCTGAGCCCTTCCCGATCTCTAGGTCAGCTCCTCCGGTGT # Right flank : TAGTCCGACTTGGTGCTAGCGGACACGCCGTTCTCCAGTTAAGCGGCCAGATTTCTCCAGGCTGATGGCCATCAAAATTCCGGGTGTGGTCACCGGAATTCCTGGTAGGTGGCCAGGTCGTTCTCCTGCTGGGCGGTCAG # Questionable array : NO Score: 4.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.39, 5:0, 6:0.25, 7:-0.26, 8:1, 9:0.16, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCCCGTGGGGGTGAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.90,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [29-26] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //