Array 1 171651-170483 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQDI01000043.1 Pasteurella multocida strain 2267PM isolate swab isolate 1 contig_43, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 171650 28 100.0 32 ............................ TCAAAATTAATCTACCAACTGAACTGGAATAT 171590 28 100.0 32 ............................ GATGTATTCCTCGCAATAAGAACGACCATAAG 171530 28 100.0 32 ............................ TCAATGTTTAAACGTTATAATCGTCTGTTTGC 171470 28 100.0 32 ............................ GTAGGGGGTAGTATGTCACTGGGTCGCTTATA 171410 28 100.0 32 ............................ ATTTCAGTTTCCTTGTGTTGTTTGTTAATCTT 171350 28 100.0 32 ............................ GGATCGATGATTGCTAGCAAGTAATCTTTGAT 171290 28 100.0 32 ............................ TTCCGATTTTTGATAGTCAAAGACTACTGAGT 171230 28 100.0 32 ............................ AAACGGTCGTGCGTCGTTCGGGTTGTGATCTT 171170 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 171110 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 171050 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 170990 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 170930 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 170870 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 170810 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 170750 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 170690 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 170630 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 170570 28 100.0 32 ............................ GTTAAAGCGAAACTAACGGATAAGCTTGCGAT 170510 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 20 28 99.8 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 96325-91315 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQDI01000038.1 Pasteurella multocida strain 2267PM isolate swab isolate 1 contig_38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 96324 28 100.0 32 ............................ AAATGGTAAACCAACAGTAAACACTAAGACAC 96264 28 100.0 32 ............................ TTTTTGATAAACATCCGACCTTAAATGAGAAG 96204 28 100.0 33 ............................ CTGTTGAGCTTGTATTCTTTAAAGAATGATTGA 96143 28 100.0 32 ............................ ACTACGTCTTGAACATTATATTCTAGCATTTC 96083 28 100.0 32 ............................ TTTCATGATATCATCGCCTTGTGGATTGAAAG 96023 28 100.0 32 ............................ TTATTGAAAATGCGGTAGTCGCCTTTATAAGT 95963 28 100.0 32 ............................ ACCCTCAGGAGTCACCCCACCTACTGCCATAT 95903 28 100.0 32 ............................ TCAATGGCTGCTTCTGCTGCTGCTTCTACCAA 95843 28 100.0 32 ............................ TAAGTCTTCTTTCTTCATCCTGTTGAGCTTGT 95783 28 100.0 32 ............................ ACCTGAAAAACCTTTTGACATTGACACGAACG 95723 28 100.0 32 ............................ TACACTTCTCACCGATCAAGCCCACTGAGAAA 95663 28 100.0 32 ............................ GGAACACTTCGATAAGAACACACATGAGCTTG 95603 28 100.0 32 ............................ AAATTATTGCCAAGTATGCAATCGGTCATGGG 95543 28 100.0 32 ............................ CTTGTCTGTGAACTCAGTTGGTGTCCATCCAG 95483 28 100.0 32 ............................ TTTATGGAGCAGGGGACGCTAAGATTGGTGAG 95423 28 100.0 32 ............................ ACTAGATGCTGGGAAGACGTGTTTAGTTTGGT 95363 28 100.0 32 ............................ ATATAAAGCCCGTCCGTAGGCTTCCTTACCGA 95303 28 100.0 32 ............................ TATAAGGCTCCTGTGGGAAGTCCTTGATGTCT 95243 28 100.0 32 ............................ TAAGAAATTACTAAATGTAGCGTAAAATGTGC 95183 28 100.0 32 ............................ ACTCATTTAGTCGACCGACAGGTCGCTTTGGA 95123 28 100.0 32 ............................ AATAAGACAGCCCTTTTGTGTTCTCCCTAACT 95063 28 100.0 32 ............................ ACTGATTTATTAAAGAACAAGTAAGTTAATTG 95003 28 100.0 32 ............................ TTATGGTTAACTTATTCTTACAGGCGCACTAC 94943 28 100.0 32 ............................ AACGTGACTGATTCGAGTTCCAAAGCTACCTG 94883 28 100.0 32 ............................ TCAAAAAATCATCTAAATAAATATCAGACAGA 94823 28 100.0 32 ............................ TATACCCCACAAGGTATTAATGTGCTAAACTT 94763 28 100.0 32 ............................ TCGAGGACATCTACCCCTTTATCATGTATTAA 94703 28 100.0 32 ............................ GCAATGCAAGACAGTAAAGCGTATGGAGCTAT 94643 28 100.0 32 ............................ CGCTGAAAAACATTATATAGAGGTAACAAGTG 94583 28 100.0 32 ............................ TTATGGTTAACTTATTCTTACAGGCGCACTAC 94523 28 100.0 32 ............................ TTTTAGACACGCAATTAGTCGACCAGCAGGTA 94463 28 100.0 32 ............................ GACGATAATATCAAAGAACTCCTTTATGTCAT 94403 28 100.0 32 ............................ GTTATCAGCGTCCACTAGGTCATTTAGTGTCT 94343 28 100.0 32 ............................ TTTTATCCAGACCGTACAACGTTTGAACCGCA 94283 28 100.0 32 ............................ AATCAGTGCAACCTGTGCTGTCTGTAAATTGT 94223 28 100.0 32 ............................ TATTGACAACTGTAATTATCTTCTATATTATA 94163 28 100.0 32 ............................ TACGGCTTCTTCTTCACTTACATATTGTAAGA 94103 28 100.0 32 ............................ TAAAGGCACACTATCCCCTACCTCTTCTTCAC 94043 28 100.0 32 ............................ TTTAGTTACTCATCTAGTCATCCATTACTCAT 93983 28 100.0 32 ............................ ACCTTTAAACAGAAACGCTTTCGTTCCACTAG 93923 28 100.0 32 ............................ AAAAGGTTACACACCTAAGGAGGTATTAGAAG 93863 28 100.0 32 ............................ TTTAGTCAACTCATCGTCATCCTTTAGTCAAC 93803 28 100.0 32 ............................ CCACTAAGACTACTTTGAGCACGTCACCTTGA 93743 28 100.0 32 ............................ TCCTCGCGCTTGGACGAGAATCGACAAGGGTG 93683 28 100.0 32 ............................ TACTAAAAGACTCCTCTTTGTTATCGAAGTGG 93623 28 100.0 32 ............................ TCTGTCGGCTCTAACCACATGACCAAATTAAT 93563 28 100.0 33 ............................ CAAGTGAGTGGGCAGGGTATTGTAAAGGTAACA 93502 28 100.0 32 ............................ ACAAACTCCCTAAAGCTTTGCCGTACATTAAA 93442 28 100.0 32 ............................ AAAATTCACATACAAGGTACTATACCGTCGGA 93382 28 100.0 32 ............................ GTAGATGTGCCATTCAACAAGACTCAAGTACG 93322 28 100.0 32 ............................ ACTATAATGCTACCTCACTGGGTTGGCGCTGT 93262 28 100.0 32 ............................ ATGTTTGTTCCCCTAGTTGGTTGATTGGTTGT 93202 28 100.0 32 ............................ ACTTCCGCTTGAAAGTGCTGGTTTGAAACTTT 93142 28 100.0 32 ............................ ATGGGGACAATCAACGACCAGTTAAAAGCAGG 93082 28 100.0 32 ............................ GAATTTCCCGCCATCAACGCGCACTTTTCCGC 93022 28 100.0 32 ............................ ATTCGTGACAAAAGACGAATATAAGAAAAGAA 92962 28 100.0 32 ............................ AGTGCGGCGTGCCGTCGTGGTGTGGCTCTGTT 92902 28 100.0 32 ............................ GATCGCAAATAAAATCGCCGATCTTGGCACTA 92842 28 100.0 32 ............................ GCGTCGGCGGGAAGTTATCGATCAATCCCTGA 92782 28 100.0 32 ............................ TGCTGTTCACTGGCACAATAGTAATGGTTCAT 92722 28 100.0 32 ............................ TAAATAAACCACTAAAACTAAGAATTTTTTGA 92662 28 100.0 32 ............................ GTTTGGGAGTGGAATTGTTTGATGAAAACAAA 92602 28 100.0 32 ............................ GTTTCTGACACTTCAACTGTTAGACTGAACGT 92542 28 100.0 32 ............................ TTCTGCGATTTTAGTCGGTGGGTATCATCGTG 92482 28 100.0 32 ............................ AAGCCCTTGTTACACCAACCACCTCTGTTGCC 92422 28 100.0 32 ............................ CAGCTCGCAATGATTCTGTTTGAAAAGGCGTT 92362 28 100.0 32 ............................ TTCGTCCGTAGTTACAAACAGCATAGCTCTGA 92302 28 100.0 32 ............................ TCTATATATTGTTTTTCATTGGGCTTGGTCGG 92242 28 100.0 32 ............................ TCCAAGCGCGAGGAGGGATAACCATAGGCATA 92182 28 100.0 33 ............................ CAGGAAAAAAACCGAAGTATTTAAGAGATTTCA 92121 28 100.0 32 ............................ ATTTACCCCTTCAATATCGGTTGTGTATTTCA 92061 28 100.0 32 ............................ CGTTGAAGAAACCTCCACGCCTTTAAAATCAA 92001 28 100.0 32 ............................ TTTGAAAACCCGGTATTTTGATTTTTCTCAAC 91941 28 100.0 32 ............................ ATTTATCCCAAAGCGACATGTCATCAGGCATC 91881 28 100.0 32 ............................ CATTTGGGGCAACGAATGACGAAAAGCGCACA 91821 28 100.0 32 ............................ TCTTTCCGTTTATCTTTGAAAAAATATCATAT 91761 28 100.0 32 ............................ GTTTAGTAACGGGTCAAGCGGAAGATGAAATC 91701 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 91641 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 91581 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 91521 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 91461 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 91401 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 91341 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================= ================== 84 28 99.6 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //