Array 1 50726-51640 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS990531.1 Aciduliprofundum boonei T469 scf_1104670154709, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 50726 30 100.0 37 .............................. TTACTTTTGCATTGATTATAGTAATTGGTATAGGCTG 50793 30 100.0 39 .............................. CTAAAAGCATAAAGGTACCTGTTACATCTTTCCAATTCC 50862 30 100.0 38 .............................. AAGATATTAGCGCTCTCTTCTATCAAAAATAGTACTAA 50930 30 100.0 38 .............................. ATTCTCCAGTTCACAGCATTTCTATGCAATCATTGAAG 50998 30 100.0 36 .............................. GAAGATGCAGATTTGTTTGATATGTTAACCTTTAAG 51064 30 100.0 40 .............................. CAACCAAGAACATCGAGCCAAACAGCAGGGCGAGGATGAA 51134 30 100.0 39 .............................. TTTCTTTGCTATCACGAACCACTCACCTGTGCTCGGTAT 51203 30 100.0 39 .............................. ATATGTCAATTCTATGAAAGCGAAATTTGGCGATGGTGA 51272 30 100.0 38 .............................. TTTTTTATCCATAAGCCATCACTTTCCCATTCATAATC 51340 30 100.0 39 .............................. CAACCTCAACATACAAGATTCCTGTTTTCCAAGATTCTG 51409 30 100.0 36 .............................. GAAAGCAATTTGATTAATCCAATAGAATATTTCTTT 51475 30 100.0 38 .............................. TTTTATTAAAGGATGAGCTTTTCATTACATTACATATA 51543 30 100.0 38 .............................. GAATGGCAAAAATACGAAAAAGCAAAGTGGTTTTTTGA 51611 30 96.7 0 ............................C. | ========== ====== ====== ====== ============================== ======================================== ================== 14 30 99.8 38 GTTAGAATAGGACCATGTTGGGATTGAAAT # Left flank : AGGCTCATAAGAATTGAATGTTATAAGCTGATAAAGCATGTGCTTGGGGTGGAAGAGTACAAGCCACTAATTGCGTGGTGGTAAGATTGTATGTGATTGTAGTTTATGATATTGCTGTGGAGCGAATAGATTCTGTGAGAAAATTCCTGAAACAATATATGATGTGGAAACAGAACTCTGTGTTTGAGGGTGAACTTACAAAGGCCGAGTTTGAAATTGTGAAAAGAGGAGTTAGAGAGCTTATTGATGAAGAGGCTGACTATGTGATATTCTACATTCTCAGAGATGAAAAATATTTGAAGAGAGAAGAACTGGGTGAGGCGAAGGTAGATATGGGAAATGTGATCTAGAAGACCTGGAATTTTTGCAACGAGTCTTTAAATACGAAATACATTACTGGCCAGATGTTATAAAATAAGAAATCTTGTTATAAAATCTGTGTTTAATTTTCCTAATCTCCAACGAAATTTTTATCTACCATTTTTAACTATATTCCCTTG # Right flank : TCTCTTTTAATGATGTTCTCTATATCTCCCAAGTCGTACACATTCTTCCCCTTCTTTTTCACCTTTCTGGCCACAATTACCAGTTCTTTCTCTCTGCTATCTTTAATAGCCCCTGACTTCTCCTTCAGCTTATTAAACTCCCTCTCCACTTCTTTCTCATCCAGCTCCGACCATTTCACCTCAAAGATAGCGATTTTCTCATCTCCAACGGCAGCAAGATCAATCTCAAAGCTCTCCTTACCCTTCTCTTTTCCCTCGTACTTACCCCAGAGCTTACCTATGCTCTTAATCTTGAAATCCACAAAGTTCTGGGCGAATTGCTCCACCAGCTGCTCGTATTTCCTGCCAACATACCTCTTTATCTCCTCTTCACTGAACTTCACCTGCCCGAGCTCGTATTTCGGGTAATTCTTCCACACAGTTCTGAACCAGAAATCAATGAGGTTCTGGGATATGTAGTATCTGTACTTACCCTTCCCGAAGGCATCTTTCCTGCGGGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGAATAGGACCATGTTGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 7932-8967 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS990539.1 Aciduliprofundum boonei T469 scf_1104670154716, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 7932 29 100.0 32 ............................. TATTCAATATCTCATCCAATACGCCCACGCTA 7993 29 100.0 35 ............................. CTATTGCTCTTGCGGTCGCTCTCTTGTCCCTCACG 8057 29 100.0 37 ............................. CATATCCTCGTATTCTTTTAACGCCTGATTATATTCT 8123 29 100.0 42 ............................. AAAATCTCAATTGCGGTTTTAACCGCTTCCTCTTTCATTCCA 8194 29 100.0 40 ............................. GATAAAACTCTTTTAATACATTGTTTATTAGACTGTATTC 8263 29 100.0 37 ............................. CTGATATGTTATAGCCATCCTTTTTTGTTATATATCC 8329 29 100.0 40 ............................. ATTATATCTGATAACAACATATTAAACATTTGTCTATCTA 8398 29 100.0 40 ............................. ATTATATCTGATAACAACATATTAAACATTTGTCTATCTA 8467 29 100.0 37 ............................. ATCTATCTTCCCATGAAGATTCACTATTTTCGTTTAT 8533 29 100.0 38 ............................. TAATTCCTTGTGCTTTGATATGTATTTTGTTATTCTAT 8600 29 100.0 37 ............................. CGTATATTTCCCATAAATTCCCTGAGTAAATCGTAGT 8666 29 100.0 43 ............................. CTGGGCTATTGTAGCCTTTGAGTCCGTAGTATTTCTTTATTTC 8738 29 100.0 36 ............................. AATGAATCAAGAATTGCTGTAATTTTCTGCTTTAGA 8803 29 100.0 37 ............................. ATCCTTATCATCCTCCCGTCATAATCTTCTTGCTCCC 8869 29 100.0 40 ............................. ACCCCCTGCGCATAATCCCAAAAGTGCTGGATGTCAGCCT 8938 29 79.3 0 ..........A...GAA....T......A | T [8962] ========== ====== ====== ====== ============================= =========================================== ================== 16 29 98.7 38 GTAGAAGAAGTACCATGTGGTGTGGAAAC # Left flank : TCTTCAAAGGATTTTGAGCGCTGCATCTCGGCACAGAGCGAACATTTTCTCGTATCCCAAGAGCCGCCATGTTCTATCCGATGGCAGCTCTCTTGGCTGGATAAAATTGGATTGAATTTGAGAGAGGATTTTTATCCTCTCAAATTTAGAAGAAATACCGCAATGGTGTGGAACTCTCTTAAGGCCCCAAAATATACTTGAAATTCTCAGGATACTTTGAGATGCAAAACCTAAGAGTAGAAATTGCGTCAGGAGTATTTAAAAGAAAATAAGGATTGAAAGATAAAAATTATTATATTTTGCATTTTTATGATTTTTGCATTCAGGAAAACAAGATACGAGCAGGTTCTACTTGCAAAGAGAAAAATAGGATAAAAATATAAAAACACTTTATATTGCGTCAGGAGTTTATATACTCATGGGTTTATTGGAGACTTGACGCAAAATGGCTCTAAAAATGTTTAAATAAACCCAGTGTATTACTATATCTGTTAATCTAG # Right flank : ATATTAATATAGAAAAAGAGGATAGAACGGCATGGAAGAAATTTGCAGAAGTGGGGTGGTTTTGTGCTAGTTTTGGTATCCTTTATGGGCACGGGGAAATATTCAAGGGTGAAGTATTACCTCGGCTCGAAGGATAACTATTTTGAAACTTCCTTCGTTTCTCGCGCCCTCGGTGAGTTTTTCAATCCAGATAAATGGCTCGTAATAACCACGGAGGAAGGGATGAAGAACTTGGAAAGTTTGAAAAGGGAAGCGCAAGATGAGAAAATTCAAGCAATAAAGATTTCCATTCCAAGAGAGGAGAGGGATGTTTGGGAGATTTTAGACAAACTCAACGATAATTTAGAGCAGGGAGATGAAGTGATACTGGATATAACGCACGCTTTTCGCCATATACCTTTCTTATCCTTCGTTATAATGACCTACCTTCAGGTTGCTAGGGGCATAAAGATTCGCGGAATTTACTACGGTGCCTACGAGTCCAGAGATGGTGATTATGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAAGAAGTACCATGTGGTGTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.50,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 13785-14344 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS990539.1 Aciduliprofundum boonei T469 scf_1104670154716, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 13785 29 100.0 39 ............................. ATAATTGCAACAAGCTCATCAGTATCTTCATTGTAGATA 13853 29 100.0 37 ............................. GTTTCCAACGATTTTATCTATGTTTTCATCAGTTAAG 13919 29 100.0 37 ............................. AATTTCAATAACTTTGCTTATTTCCTTTGCCATATCT 13985 29 100.0 37 ............................. CATTTTTCTCACCTCAAACATATATCATTTTCAATCA 14051 29 100.0 36 ............................. CAATACGAATTTATTGTTTATCTTTTTGTAGATTAC 14116 29 100.0 38 ............................. CTATTCTCCACTTTTTTATTTATTTCATCCCAAACTCC 14183 29 100.0 37 ............................. CATTTTTCTCACCTCAAACATATATCATTTTCAATCA 14249 29 100.0 37 ............................. ACTTCTGTTATTATTCCCTCTCTCTTTATCCTATCAA 14315 29 86.2 0 .....................T....GTA | T [14335] ========== ====== ====== ====== ============================= ======================================= ================== 9 29 98.5 37 GTAGAAGAAGTACCATGTGGTGTGGAAAC # Left flank : GAAGAAAGGGTAAACAAGGTCAACAAATTTCTGCGTTCTTACCTGCACTGGATACAAAATTCCGTGTTCCGAGGTGATATAACCCAAAGCCAGCTCCAAGCCATAAAGGACGGAATAAAGGGTATTATAGAGGAGGATTATGATTCTGTAACGATCTATGTACTTCCCAGCGAGAAGTACTTGAAAGTGATAAACATAGGGATAGAGAAAGGAACAACGGACATGATCTTCTAAAATTTCATTTTGCGTCAGGAGTATTTAAAAGAAAATAAAGATTGAAAGATAAAAGTTATTATATTTTGTATTTTTATGATTTTTGTGTTCAGTAGAACAAGGAATAAGCAGGTTTTACTTGCAAAGGGAAAAATAGAATAAAAATATAAAAAATCTTTATATTGCGTCAGGAGTTTATATACTCATGGGTTTATTGGAGACTTGACGCAAAATGGCTCTAAAAATGTTTAAATAAACCCAGTGTATTACTATATCTGTTAATCTTG # Right flank : ATCTTAAGTATGGGCTAATTGAATTTGTAAAATGAAGATAGAAAAATACGAACAAAATTATTAGTTGGGCTTACATGGAACCAACAACTTCGCTTGCTGCTTTTATCAGTTCATGCTTGGTCCATGCTCTCCACTCAACCGGTACGACCACTGGATTTTCATCTCCCTCGTAGTATATGGCAAGGATGTCCTCTCTTAAATCGCTTTCCTTGGACTCTGGCATCATAAACCTGGCAAGCTCGGCCTTTGCAGCTATGATCATCTTATTCTCAAACTCAAACACCACGCCAACCTCTGCGTGCAACCTCTGTGCCTCGTTTGCAATCGTAGCAAGCTCTTTCTTGTTTCTTATCTTGAAAGGTACATCGTAAATGTAGCTCAATTTCTCCTCTGGAAACATCACTTCAAAGATATCCCTATCAATCCTAAGCATAGAGTGAGCTACTTTCGCGCTTAGAGAGAGAATGGTATATGCGGGGAGAGTTAATATCAAAGCCACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAAGAAGTACCATGTGGTGTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.50,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //