Array 1 1179223-1175301 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSPQ01000001.1 Listeria monocytogenes strain CFSAN026607 CFSAN026607_contig0000, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1179222 29 100.0 34 ............................. TTGACTAACGTAGGAACGTATCGAAGACTTTTGT 1179159 29 100.0 37 ............................. CCCTCCGTTCGTTTCAAATTAGAGAGGGGTCGACCTT 1179093 29 100.0 37 ............................. TTAATAATGTCTGATAAGTAAGGGGTACTGATGTTCA 1179027 29 100.0 36 ............................. TTTATTACATCATGACCGCAAGTTTTAGCATATGCT 1178962 29 100.0 37 ............................. AGACTCTAGAAGAGTTTTTATCCCACAAACCTACTTT 1178896 29 100.0 35 ............................. AATAGTTTCGTAAGTAATTACTCATGTAAATACAA 1178832 29 100.0 34 ............................. GTAGAAACGTAGAATCTTACTTTTTTGTCGTTCA 1178769 29 100.0 37 ............................. GACGATTGGACTGCTCCCTTCGGCGGGACAGAATTCA 1178703 29 100.0 37 ............................. TTTGAAGTAGCACAAACGTACAAACGAGCTACCACCC 1178637 29 100.0 38 ............................. TAAAATAAGTTAATGGAAGCGTTTACATATGCACTTAT 1178570 29 100.0 38 ............................. ACTTTAAAAGGTTCCTTTGCATTTTTTACATCTAAAAT 1178503 29 100.0 34 ............................. CGATTTTTGAGGGAGGAAAGCAAAGAGGAAAATT 1178440 29 100.0 36 ............................. CAGAAAATGGAAAGTGATAGTGGGGATGGTGTTGGT 1178375 29 100.0 36 ............................. CTGGCTTTCTGTGACTACGTTATTATAGTCATCTAT 1178310 29 100.0 35 ............................. CTACTTACAAAAAGTAAGTGGTATTAGTACCTAGT 1178246 29 100.0 36 ............................. CGTTTTACCTGTTTCATCTGTGTAAGTCCATGTACC 1178181 29 100.0 36 ............................. TGGGATATAGCTTTCTAAACCTTCACTGATAATTTT 1178116 29 100.0 34 ............................. AGAGGTTATGGGTGGTGGTTAGATAACATAAAAG 1178053 29 100.0 37 ............................. GCGTTTTTAAATGCGCTACTTATCGCGTTTAACACTT 1177987 29 100.0 35 ............................. ATCGACAAGCAAGATGAAGCAGTGAATAACTTAAA 1177923 29 100.0 34 ............................. ACGGGAGGGCGATATGAGCGACTTTGGAGCCAAT 1177860 29 100.0 36 ............................. CCCAACCCAACGAAAATTACAGACAGTAGGGCTAAA 1177795 29 100.0 34 ............................. CTTAACCTTTGCCTTTTTTTATCCCAACCTTTTT 1177732 29 100.0 35 ............................. TGCGGTATCTGCCATTTTCGCTCCATCGCCAATTA 1177668 29 100.0 34 ............................. AGTTAAATCTACATTTTTTCCTTTGACATGTAGG 1177605 29 100.0 37 ............................. CAAAATGTACGGTCATTATATCTATGTCGCTGTTCCG 1177539 29 100.0 38 ............................. AGAAATTAAAGAAGGTAGGGCATTCGTTGCACCGGAAA 1177472 29 100.0 35 ............................. AAAATTAGCGTTCCAAAAATAAGACCTGTCGCAAC 1177408 29 100.0 35 ............................. CCCGTATGGTAGAACTAAGAATACATGGGATGAAT 1177344 29 100.0 36 ............................. TCATAATAAGAATCAATTATTTTTCGCAAAGGTACT 1177279 29 100.0 35 ............................. TTAAGAAATATGATTGATTCTCTGGATATCACTTT 1177215 29 100.0 37 ............................. CCTCCACAATCACTCGGCTTTCTTCGTCTTTATCGAC 1177149 29 100.0 36 ............................. ATTTAACAAATCAGCTAAATCAGCGCGACTCTGATA 1177084 29 100.0 37 ............................. GTCGCTAGAGCTAAAAAATGGATAGAGGAACAACAAG 1177018 29 100.0 36 ............................. TCAACTAATATTAATATCTCTTGTGGATTGGCCATT 1176953 29 100.0 37 ............................. TCTGTTGTAACTGTTGTGCCTTCCACAGCGTGCACTT 1176887 29 100.0 35 ............................. ACATTTTGCACGCACCAAGCTTGACGGTCTGAAAC 1176823 29 100.0 35 ............................. TTTATCTTTATCTATTTCTCCAGTAATAGAGCACG 1176759 29 100.0 34 ............................. ACATTTTTATCTGAGAAAGGGTTTAGGGAAAATT 1176696 29 100.0 36 ............................. CCAGAAATGGAGTGCGCGGTTGATTTTGGATTTAGC 1176631 29 100.0 37 ............................. AAGAACATTAGATGAACTTAAAGCGTCTGTTGAACAA 1176565 29 100.0 35 ............................. AAACCAGAGCCAGAAAAAGAAGTTGTGAAAGAAGA 1176501 29 100.0 36 ............................. GCTGTACTAGCACTAGAATCAGCGGGATAACTGACA 1176436 29 100.0 36 ............................. AACCACTCCATTCCAAAATTTATAAACCGCCGGAGA 1176371 29 100.0 37 ............................. ACGTCACTTGTTTTTGCCTTTGTTTTCGCCCTTTCCT 1176305 29 100.0 36 ............................. GTTGAAAAGCGCACCATTGTTTTAATTTTTTTAATT 1176240 29 100.0 37 ............................. TTTTGTCGCATAAATTCTTTGATGTGGCGGACTGACG 1176174 29 100.0 35 ............................. AACAGTATCATCACGTTGTTATTGCTGTCACCTGT 1176110 29 100.0 36 ............................. TAACCAAGCATTGCCAAAAACTCGTCTGTTGATAAT 1176045 29 100.0 36 ............................. TTCTATTGCAGAACAGAATGAATTGTATGCACAAGG 1175980 29 100.0 37 ............................. TCGTTAATCATAATTGATGAAAGTCATCATGTGTTAG 1175914 29 100.0 36 ............................. ACGGGTACCAGCTTTGATTTGCCGTTTTCAATTATT 1175849 29 100.0 35 ............................. TTTATCACTCCTATGCTTTTCTTATTTCTGTAAAT 1175785 29 100.0 35 ............................. GCTTTTTTCAACAATTTTATCACCAGATGTCATTA 1175721 29 100.0 36 ............................. ACGTTTGCGGTAGTTTTACCGGGCACGGTCAAATAT 1175656 29 100.0 36 ............................. AGAGAAATCTCAAGAGCCAGCCAAGCAAGAGACATC 1175591 29 100.0 36 ............................. GGCTTTCTGGAATTGTTTCGCTGACATCCCTGCCAG 1175526 29 100.0 37 ............................. CAAAACAGAGAACGCGTGTTCATTATCGGACATCTTA 1175460 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 1175396 29 100.0 37 ............................. AAAAACTATGCAATTAGCAAAGTGATTTTATGTAATT 1175330 29 93.1 0 .......................C....C | A [1175305] ========== ====== ====== ====== ============================= ====================================== ================== 61 29 99.9 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : GTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCCACAACACCTAAACCAACAAAACCACAACCAATGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACTACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCCCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCGAATAGCGTCTGTACTTTCTTATTCGCAAGGAGTTCTTTCTCGACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //