Array 1 67317-65474 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVFV01000025.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN033890 CFSAN033890_contig0024, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 67316 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 67255 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 67194 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 67133 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 67072 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 67011 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 66950 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 66888 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 66827 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 66766 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 66705 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 66644 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 66583 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 66522 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 66461 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 66400 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 66339 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 66278 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 66217 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 66155 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 66052 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 65991 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 65930 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 65869 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 65808 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 65747 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 65686 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 65625 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 65564 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 65503 29 96.6 0 A............................ | A [65476] ========== ====== ====== ====== ============================= ========================================================================== ================== 30 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4038-3095 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVFV01000008.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN033890 CFSAN033890_contig0007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4037 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 3976 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3915 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3854 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 3793 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 3732 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3671 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3610 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3549 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3488 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3427 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3366 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 3305 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3244 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3183 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3122 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //