Array 1 3823223-3821319 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXYC010000001.1 Salmonella enterica strain S15BD05371 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 3823222 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 3823161 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 3823100 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 3823039 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 3822978 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 3822917 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 3822856 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 3822794 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 3822733 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 3822672 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 3822611 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 3822550 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 3822489 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 3822428 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 3822367 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 3822306 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 3822245 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 3822184 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 3822123 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 3822062 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 3822000 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 3821897 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3821836 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3821775 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3821714 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 3821653 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 3821592 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 3821531 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3821470 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3821409 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3821348 29 96.6 0 A............................ | A [3821321] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3840847-3839354 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXYC010000001.1 Salmonella enterica strain S15BD05371 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3840846 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 3840785 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3840724 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3840663 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 3840602 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 3840541 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3840480 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3840419 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3840358 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3840297 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3840236 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3840175 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 3840114 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 3840053 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 3839992 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 3839931 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 3839869 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 3839808 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 3839747 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 3839686 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 3839625 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3839564 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3839503 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3839442 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3839381 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //