Array 1 883982-884437 **** Predicted by CRISPRDetect 2.4 *** >NC_016027.1 Komagataeibacter medellinensis NBRC 3288, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 883982 29 100.0 32 ............................. ATCACCGTTCTTGATTCGCCGCTGACCTCTGG 884043 29 100.0 32 ............................. CGGGGATATGCCTGTATCTGGTGCAGAACAGG 884104 29 100.0 32 ............................. GTGTTATCCTTCAGGATGCGGCAATCACGCCA 884165 29 100.0 32 ............................. GCCGACAACGCGGCCATCCAGGCATCGTGAGC 884226 29 100.0 32 ............................. CCTGCTTGCGGGCATGATAGGCGTCAAGGCGC 884287 29 100.0 32 ............................. TTCAGGCGACCGCAAAGAAGCAGGCAGAAGAA 884348 29 96.6 32 ............T................ TAATCCACAATGTCCGGGTCGTTCTCAAAGGC 884409 29 89.7 0 .............A.........A....T | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.3 32 GTGTTCCCCGCACGCGCGGGGATGAACCG # Left flank : CCAGGGTGTCTTCCTCATTGGCGTAATCAGTACTTTCCTGCCACAGCAGGTACAGCTTCTGGTTCATTTCCTCTACCTGGCAGTCATGTTCCAACTGCTGCGCGCTGACCAGCCTGCTGGGGGCCGTGCGGTACATGCCCAGTTCCTGCTGTGCCTTGGCAAAGACCCGCCGCCGTTCCTTGATGGCAGGCAGGCTGATATCCACAAAGCTGAGAATTGCCACATTCAGGCCAGCCGACAACTGCACAACCGCCTGAAAATCACCCCAAGTCTGGCTCACGCTGGCCCTCCGGTCTCAAATAGCCGCAAGAACGATACCGCATGCCACCGCCGAAAAGCAGCCTGCAAAACAGGCGGGCAGGATTGCATTCATTCCGGGGTTGGCCCCATGGCAACCATGCTTTCACGGCGGCGGAAAAACGGGTAGAACAAAGGGCCATAAAGTTGGTAGAGTCTTTGACAGTAAAATAGTGATTTGGAAACAATGGGTTCCAGGAAGG # Right flank : TCATCGGACCACGAAGGAAAATGCCCTACAGCACATACGCGCGCTGCCGCTGATTTCGGGAGGCGTGGCCAGACATCCCCGTGGATGACACGCTACAGAATAGTGGCTGAACGGTGGGCAGGTGGGGCCAGCCATAAACCCCACAATATTGATCCCGCCACAAGGGCGGTCCTGCGGTCGGCTGAATATCGCCGCTTCACTGCACGCCGCACCCATTACATTAGGACGGCACGAAGAAGAATTCCACGACAGTTTTCAGTATTGGGCAGGACATGACCGGGATCAGGGACGGCCTGACGCGGATGGCGGCAGTTGGACGCAACCCGCAGTAACTGCGGGAGGCAACTGGGCTGGGACTGTGTTCCCCGCGCATGCGGGGATGAACCATCGTCGTGGATTTTCCGGTCAACCGGAACCGTGTATCCCCCCGCACATGCAGGAATGAACCGTGAGGCAAAAAGACTGCTTGAAATCCCCCCCTGATAAGAATGATAACGGTC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCTCGCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 890883-889939 **** Predicted by CRISPRDetect 2.4 *** >NC_016027.1 Komagataeibacter medellinensis NBRC 3288, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 890882 29 100.0 32 ............................. GGCGATGCTGCATTGCATGGTGACGTGCGCGG 890821 29 100.0 32 ............................. AGGCTGTGACATACGAACAGCGCCGGTCCCTG 890760 29 100.0 32 ............................. CTCACGCAGCCATTCCCGCGGACTCGAAACAT 890699 29 100.0 32 ............................. ATCGCCAACAATGATACTGTGCGCCGTCTGGC 890638 29 100.0 32 ............................. TGTCGTTTTCCCAACTGTCCCACTCATACTAA 890577 29 100.0 32 ............................. GCGTTCAACGATTTCACCACCTGGCTGGATAG 890516 29 100.0 32 ............................. GAAATCTGCTATTTTACGAACTTCGTTTTGAA 890455 29 100.0 32 ............................. TTCTATCTGCGGCCCAGCGCCGTGCAATCGTG 890394 29 100.0 32 ............................. CTGGGTGCACTGACGCAGATCGGTCGGCATCT 890333 29 100.0 32 ............................. ACGGCTGGGGCAACGCCCGACATGCCGTTGTG 890272 29 100.0 32 ............................. CTGGAAGGCAAGCTGACCACCTTCACGCAGGA 890211 29 100.0 32 ............................. ACGGCGGCCTTCCGTCTGGATTTTACGGTCGG 890150 29 100.0 32 ............................. TAACAAAAAACTTATTCCCATTCCGTACGTCT 890089 29 100.0 32 ............................. GACCGGCACAGCGCTTCGTTCATGACATGATC 890028 29 100.0 32 ............................. ATCGAGGGAGCTAACCTTATTCTAACATTAGC 889967 29 89.7 0 ............T.....A..C....... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.4 32 GTGTTCCCCGCACACGCGGGGATGAACCG # Left flank : GTGCTGGCGGCAGGCGGGCTGGAACCGCCCCCGGCGCAGGCGGAAGCCATGCCAGTCGCCTTTGTGGAGCCGAAAGGGCCGGGTGATGCTGGTCATCGTGGTTGAGAACGCCCCGCCGCGCCTGCGCGGGCGGCTGGCGGTGTGGCTGCTGGAAGTGCGGGCGGGCGTGTACGTAGGCAGCTACGGGCAGCGCGTGCGTGAGATGATATGGGGGCAGGTTTGTGCCTATATTGGTGAAGGCAACGCGGTAATGGCCTGGGCAGCGCCAACCGATGCTGGCTTTGCGTTCGACACCTGTGGCAGTAACCGCCGTGTGCCGGTGGATTTTGACGGCCTGCGCCTTGTCGCCTTTGGCCCCGAAGCCGCCTTGCCCACACAGCCCGGCCCCATGGCAACCCCGCTTTCACGGCGGCGGAAAAGGGAGTAGAAAAAAGGGCCATAAAGTTGGTAGAATCTTTGACAGTAAAATAATCTTTTGGAATCAATGAGTTCCAGGAAGT # Right flank : TAACTGTATTTCCGCTGATCTGTGAAGTCAGTGATGTCGCCAGTCTGGAAGTAAAGCCACCGTGACTGATCAGGATGGTCGGGTCGGGCCTGTCGATCTCGTAGAGGGGATTGAGTGGGGTGTAATCTTCCTATCGCACACCATTGGGGTCGATCCCTTCGCGCATGCGCTGCCGGGTATTGGTCATCATGAGAGAGCCAAGGGCTGCCAGAACAGGCGTGGGATTGGTACCGATTGCAGCAATCCGGCCCAACGCAGATGCAATCGGATCGGTGCTGCCATCAACGGATATGTAAATAAAGCTATGATGGAAACCTCCCGGTAAATGGCGTATGTTCATGTCTGGCATGCGGCGACACGGTGATATTCTGCTGGCCGTAGCACCGCCGTCATGGCGGGAGCGCTTTGCGGGGTTTTGTAGCAGGCCCCGTCCGCGTGCCATCAATTCCCTTTTTCCTCATCCGGGTCAGGCAGTAGTAGTTCGCTTTAGAATACACGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 901261-900439 **** Predicted by CRISPRDetect 2.4 *** >NC_016027.1 Komagataeibacter medellinensis NBRC 3288, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 901260 29 100.0 32 ............................. ATTACCGACTTGCCAGCACCTACAGGTGCCTC 901199 29 100.0 32 ............................. ACGGAACGCTCACCTGGTATCGGGCCAAAGAA 901138 29 100.0 32 ............................. ATCAATTCGGGCATTTCCATGCGTGGCAATGC 901077 29 100.0 32 ............................. CGGCGTATCTTTGTCCAACCCGCTCATATGGC 901016 29 100.0 32 ............................. CGCCCGTGGGTGTCCACACAGGTGGCGGCAGA 900955 29 100.0 32 ............................. ACGCTGGGGAATGTCCTCGCGTCTATATCAGA 900894 29 100.0 32 ............................. GTGCACCGTTCCCGTCATTCGCCACATACCCT 900833 29 100.0 32 ............................. CAGACCGGACAGGAAAAAATTTCCGATGATTT 900772 29 100.0 32 ............................. GCAATATTGCGGTTTGTCGGCTCCATTTGGAG 900711 29 100.0 32 ............................. ACCCCGATCATCCCGCAAACTGGCCGCAGAAC 900650 29 100.0 32 ............................. TAGTAGTGCCGGTTGTAATTGTTGTGTGGCTC 900589 29 100.0 32 ............................. TCGTGCCGGAACTGCTGCCCGACGTGGTCGTG 900528 29 100.0 32 ............................. TCTGGGTATCACGGACAAGCAACTGGGCGGTG 900467 29 82.8 0 .............C...A...C.A...G. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.8 32 GTGTTCCCCGCACGCGCGGGGATGAACCG # Left flank : ATGTGGCGCGCCGGAGCGGGGACCTTGTACTCAACATTCTGGGCCAGGGGCAGGGCGGGCTGGCCTTTACCTTCTTCAAGCACGCCGAATACGCGGATGGGAAACTGGCCGGGCAGGATATTGGCTGGGCAGCCAATGGCGCGCCCATCCTGAGCGCGGCCCCTGCGGCGGTGGAACTGAAGGTGCGCCATGTTGTGGAACTGGGCGACCACCACACCTTCATTGCCGAAGTCATTGACGTGCACCTGACCCGCTCCATCACCGGTCGGCCGGATGAATCGGTGCTGCAGATGAAGGACCTGGGCGAGAAGGTTTTCTACGGCGGCTGAAAGCCCATGCTGCGTCCGGTGCCGTACCTTGGGTCGTCCCGATACTGCCCGTCTGCCATACTGAAACGCCCCCTTTTTTAATGGCCGGAATGGGGTAGGGTTAAGGCTGGAAAAGTTGGTAGATTCTTTGACAATAAAATATGCTTTTGGAATCAATAGGTTCCAGGAAGA # Right flank : CCCTGCGCAGCAAAAAAAGGGCAGGCCGCTGTGCAGGAATGCCACACGTCCCGGAAGGCAGAAGCCTGACCTGTGATTTTGACATGCTTTTGGGCAAGACCCCTCCGGTATCTTGCTCTCCAGCCTCTACTGGCAATACGGAAAAAAGGTGAAGCCGTGCCGGATCAGGACGAACAGGGGCTGGCGTTTTTTTGGGGAAAGGCCCGACCGGATGGGGCCGAAGGGCAGGGGGCCGCCGCCATGCACCCCCTACCTGCTCATATGCTGGATGTTGCGGCGGTGGCCGCCCTGCTGCCGGGTAGCGGGCAGATGGGGCTGGACCGGCAGCAGATCGCACTGCTTGTGGCGCTGCATGATATTGGCAAGCTGGCACCCGCTTTTCAGGCCAGGGAGCCGGCATGCTGGCCTACGCAGGTGCTGGGGGCATGCCCAGACAGCGTGGTGCAGACCCGTCATGATGCCGATGGCCTGCTGCTGCTTGCCCATGTCTGCGCCGATGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCTCGCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //