Array 1 45504-44412 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVZJ01000066.1 Neisseria meningitidis strain MRSN431051 MRSN431051_contig00066, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 45503 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG 45437 36 100.0 30 .................................... CTTCCGTGAGATACATTTCCCAATCTTCTT 45371 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA 45305 36 100.0 30 .................................... AATTTAATACGGCGACCATCTCGTGCCAAG 45239 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA 45173 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA 45107 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG 45041 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG 44975 36 100.0 30 .................................... GTATTGAGCGTCAAGTACTCGCCATTCGAG 44909 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 44843 36 100.0 30 .................................... TCACTCTAAAAATCCGATTCTACCACCGCT 44777 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC 44711 36 100.0 30 .................................... TAGATTGCCTCATATACGCCGAGCGGGTAG 44645 36 100.0 30 .................................... CAGGTCGTGCTGGAGCAGGCCGACGATTTT 44579 36 100.0 30 .................................... CATACAGTTCATCTTCACCTGCAATCAGGG 44513 36 100.0 30 .................................... TCTGCGGATTCGTACAAGTCATAAACTTTT 44447 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.8 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : TCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCT # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //