Array 1 486-820 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJDJ01000019.1 Lactiplantibacillus daowaiensis strain 203-3 contig19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 486 29 100.0 32 ............................. CACAGGTCAAGATTTCATCACTGTATTTGGCG 547 29 100.0 32 ............................. CATCTTGGCACATTCTCCAACGGATAACTTAG 608 29 96.6 32 ............................C AAAAGAACGACCGTCCAGCACACAATAGCAGC 669 29 100.0 32 ............................. CTTACCTTGATACCGTGCTAAATATTGTTCGA 730 29 100.0 32 ............................. CCGCCTAAGAATCCTTACGAATGGATTAACGA 791 29 79.3 0 ...........A..C......CCA....A | C [816] ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.0 32 GTATTCCCCACGTATGTAGGGATGATCCT # Left flank : ACCATTAAAAATACATCATCAACAGACTGCCATTGAAAGATTCCGGGCTTGTTCGGATTAAACTTGTAATTTGCCCTTTCAAAATGACAACGGTATTAATGGCTTTGTTAATCCATTACAGTTTCATACCTTCAGCATCTCTGGTAGAAAAATTGAAAGTTCCGGTGCATTCTTAGATGATTATACATTTGCCCGTGTTATTAAAATCCACAAATAAATTTTAAACATTTAACAACAAGGCGACCCAGTCACAGCTTGATTGGGGTCGCCTTGTTATAATCGTTTAATACCAAATTTACATTTCTGATGACTTTCTTATAGTAATGCGTGTTAAATTGATAAATTATCTGGAAAGACCGCTTTTTTGCATCGGCATTATGTTATATTGATTTTAGGTTAGTAAATAGATGATATTTAGGAACAAAGTTAATAAAAAACAGTACTTTCTCAAAAACAGGATGCTGCTATACCGGGATTCTTTAAGTG # Right flank : AGCACCATCAACGCCAAAATCCCCAAAATAAAAGCGACTAGCAAGTTAAAAAAGCTCACTAGTCGCTTTTATTTACGCTTCTGGTGCCAAGCCGCGTGCTAGAAACGCTGCCGCTTCCGCACTAGCTTTTTGAATATCAAAGTCTTCAGTTGCGCCCAATAAAACTTGTGGTAAAACGTAACTCAAAATAGTCCCCAGCAAATATTGCACAATTTGTCCGATTGGCCAATCGATTAATTGCCCACTATCCTTGTACCGCTGCAAAAAGTCGCCCGCAGCGCCTTGAATAATGTCCATTGCTCGTTCTTGCAAGCCTTGCAAGATCTGCGGGTTGCGGATAATCTCTTGGGCGAAAACCCGAATTTGTTTTTGATTTTCCAACACAAATGTCATCCGATCAGCCACAATGTATTCTAACAATTGTTGAAAATCCGGTAAATCGTGTTGATTCACTTCAGTTAAAAATTCCCCCGCAGCCATTGGAATCACATCATCCAAAA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTATGTAGGGATGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.60,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2621-1328 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJDJ01000033.1 Lactiplantibacillus daowaiensis strain 203-3 contig33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2620 36 100.0 30 .................................... TCAAAATTTTGGGAATTTTGGATTCATGAA 2554 36 100.0 30 .................................... AGTGTCGCTAAGCAGATACAACAAGACTAT 2488 36 100.0 30 .................................... CGGTGTTGATTCGCCTGCAACCGTGAATCC 2422 36 100.0 30 .................................... TAACACGTTCGATGATTGAGGTTGATGTAT 2356 36 100.0 30 .................................... GGATAAGAACCTTAAACGAGTCGCCACCTT 2290 36 100.0 30 .................................... AGCAGTAGATACTAGTGGGAATGTTTATGC 2224 36 100.0 30 .................................... ACGTGAACATGCACTCAAATGGTGGCGACG 2158 36 100.0 30 .................................... GAACGATTACATGTTTATTTATATCACTTA 2092 36 100.0 30 .................................... AACTAATTAGGAGGTAATCATAATGGACTT 2026 36 100.0 31 .................................... AGTGATAACGTGCGTATACCCTTTCGAGATA 1959 36 97.2 31 ......A............................. CTAGGTCTACAATATTTAGATATGAAAAAGG 1892 36 100.0 30 .................................... CGCTTGCGCTTGTTTGCTTCCGCTAGTTTG 1826 36 100.0 29 .................................... TCTGGTTCAAAATGACCACCATACTCAAT 1761 36 100.0 30 .................................... GGCTTTACTTGTCTCCAACCCATTATGGAA 1695 36 100.0 30 .................................... ATGCTAGTGCCTGGATAAGCTTGCCTAACT 1629 36 100.0 30 .................................... AACCAACTTTACTGCCGGATTGCAGAGTAA 1563 36 100.0 30 .................................... AGTATATCCTGATAGAACATTGAAGAAAAT 1497 36 100.0 30 .................................... TCAGCGTAAACCATGCCACCTAGTCTCTTA 1431 36 100.0 30 .................................... CAAGTTTAACCATGAAAGTATTTCTGATGA 1365 36 83.3 0 .....................C.CT...G..T...T | GG [1343] ========== ====== ====== ====== ==================================== =============================== ================== 20 36 99.0 30 GTTTTAGAAGGATGTTAAATCAATAAGGTTAAACCC # Left flank : TAGTGATGGGGTGAGTGAAAAGTATAGTTCCGGGATTTACAAGCAACTTGAAGCTGTATTGACTGATGATCAGCGTAAATCCATAACTGACATGAACAGTCAGTTATATACCCTTGTTCAGCAATGCTTATTCATGATTGATCTACCCTTGGAAGTCACTTATGATTGGGATTTAAAGAAGTTGTTCAAGTACTGCAAAATTCATTTTAATGCTGATACCATGCAGAACCCATATGCTATAATTGAATCAATTATTAAAATTCATTTAGAGTGTGGACTCAAGTCTGCGGTTGGATTAACTAATGTCGCTCATTATCTTAATCAGCAGCAAATAGCTGACTTATCCAAGCTCACAATTTCCACGGGGATCTCGACATTATTAGTAGAATTCACAGATATGAAGTCACAGGAGCTTTATACTAATTGCGACTTCTACTACATTGACAAGGACTTTGTTGATTGGCATTCATAGTACATTAAAATCCGGTTATAAAAAATCG # Right flank : TATTGGCTTTACTTGGCTGTATGAACTGATGCCACCTGCAATAGTTCAGTAGGATTGTCCAAATTAGGCGATATTTATCAAACAGTATGCAAGCTAATTTCGTGTTTGAAGATGGTAAAGGTTTGATATACATGCTGCTGTCACCACACAGAGGTCACCAGCCCCGAATAGCCAGATTCAGTTCCAGGTCTGCCGGACCCAAGACGACGAGCAGGGTTGTTGCAATAATCACCACGAAAGAAGGTTGCCAAGTTTTTGACAAGCATCAACGCTGCAATAAGGACGGTAAGCTAACCGTAACGCCAAAAGCTGATAAAACCGCGGAGTATGCTGGTAACCCAGCAAAACCAACGATGCCAGCGCCTAAGCCAACGGTTACTAAAGTAGTTAAGATGATCCAGACTGGTCATCACCAAACTTAATTTGATCGATTGGTGGCTTGGTTCAAATAATTGCTAGTCTGAGGGCTCAGCACGTGTACTAAACACATTAAGGAATGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGATGTTAAATCAATAAGGTTAAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //