Array 1 1367367-1369042 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYNF01000001.1 Escherichia coli O157:H43 strain T22 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1367367 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 1367428 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 1367489 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 1367550 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 1367611 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 1367672 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 1367733 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 1367794 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 1367855 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 1367916 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 1367977 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 1368038 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 1368099 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 1368160 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 1368221 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 1368282 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 1368343 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 1368404 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 1368465 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 1368526 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 1368587 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 1368648 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 1368709 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 1368770 29 100.0 32 ............................. CCTAGCCCGATTATCGGCATGAGCGATGCGGA 1368831 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 1368892 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 1368953 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 1369014 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1384498-1385259 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYNF01000001.1 Escherichia coli O157:H43 strain T22 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1384498 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 1384559 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 1384620 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 1384681 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 1384742 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 1384803 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 1384864 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 1384925 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 1384986 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 1385048 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 1385109 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 1385170 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 1385231 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //