Array 1 96784-105686 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010848.1 Rathayibacter toxicus strain 70137 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 96784 29 100.0 32 ............................. GTTCCCTCCTGGCCCTCCGGCTAGGCCGTGGT 96845 29 96.6 33 ............................T GAAATTCGTGGTCGTAGAAAAGTCAAGTCCTCA 96907 29 96.6 35 ............................A ATGTACGAGTCGTCCGCCAAGGTTAAACCATGGGA 96971 29 96.6 32 ............................T GTCCCGCGCGGACTGGCGTGGAGCGAAATGGA 97032 29 96.6 33 ............................T GATTTCGTGTTTGGGTGTGTAGAAGTCGGTTGG 97094 29 96.6 33 ............................T GTCTGAGCTAGATAGCCATGAGTAGTGGCATGC 97156 29 96.6 32 ............................T CGGTAGCCAGACCTCGACGCTGTGGCTGGACA 97217 29 96.6 33 ............................A TTGTCAAGACGATTATTCGACTTGTCGTCATCA 97279 29 100.0 32 ............................. AATCGTTGAACACGCCGAACAACTCATTGAAG 97340 29 100.0 32 ............................. CCGCCCATTATCGCCACGAATGGCATCTAAAG 97401 29 100.0 32 ............................. ACTGGATGGCCTTGTTAAGGGCGGCATTTTAG 97462 29 96.6 33 ............................G ATAGTGTTATCTTTCGGTTCAACAATAGCAAAA 97524 29 96.6 32 ............................T GCTGCACGGCGCGGACAATCTGATCCTTTTGA 97585 29 100.0 32 ............................. TATTCTTCATACGTCGCACGAGATGAAGACTT 97646 29 96.6 32 ............................T CTGTGACGTCAGTTTTCTGGGGTTGGGGTCGA 97707 29 96.6 32 ............................A TCTGGTGAGAATCGCTACTGTAGACAGTGCGC 97768 29 96.6 32 ............................T GGCAGCCCTATCGAGCTTTCTGAGGACCTCGA 97829 29 96.6 32 ............................T CAACTTTTTGGAGGCGTATCATCCGTGGGATA 97890 29 100.0 32 ............................. AGCTAAAGTGAAATAACCGTTATCAGCGTTAC 97951 29 96.6 32 ............................G TCATCCAGCTGTGTATCTGTCCACTGCCGCCA 98012 29 100.0 33 ............................. TTAAAAGGGTTTTGCTTCCTTTTATTGATTTTG 98074 29 96.6 32 ............................A TCGGTATCGGCGCTTTCGTGAGCCTGCAAGGC 98135 29 96.6 33 ............................T TCTTCAGCGAAGAGAGGTTCACCTTCGCATGAG 98197 29 96.6 32 ............................A AGTATGCTCCTCCGTCAAATCGGCCTCAGCGC 98258 29 100.0 32 ............................. CTCGACGGTCTTGCCGACGGCATTACGAGTAT 98319 29 100.0 32 ............................. ACAATAGCCACACTCACCGGCTCGGCCAATGC 98380 29 100.0 32 ............................. AAAACCGAGTGCATCAACGGTCACCCGTTCGA 98441 29 96.6 32 ............................T TAGCCCTTCTTTCTAAGATACGGAGTGTCGAC 98502 29 96.6 32 ............................G GCGGCTTTCGGAACCGAGATCGATTTCAGTGA 98563 29 96.6 32 ............................T GTTAAACGTGATCCAGGCCCCGCAGATGATAA 98624 29 96.6 32 ............................T GCGAGTCGAGGCACCGGCTCACCTGTCGACCC 98685 29 96.6 33 ............................G GATTCGACGGCTTCATCCGACAGAACGTCAGGA 98747 29 96.6 32 ............................A ATTTAATCCCGCGGGCGCGGATACTTTTACTA 98808 29 100.0 32 ............................. AAGAACGTCATCCCCGGCTTTAGCGTCAACCG 98869 29 96.6 32 ............................T TCGCCTCGGCTGGCCATGTATGAGGTGAGTAG 98930 29 100.0 32 ............................. GATCGGCCCCGCTTTTTTAGGCCAACCTTTTT 98991 29 96.6 32 ............................T ACCCGCCCCGAGGAAGAGGTTAAGCGGTCTGA 99052 29 96.6 33 ............................G TCGACAATGTCGGCGTTGGTGGTCATGGTGGTC 99114 29 100.0 32 ............................. CCCTTCCCGTCACGCTGCACCCTCGTGTTTTC 99175 29 100.0 32 ............................. TCTGCGGTAGTCATCTCACCAAACGTATCCAA 99236 29 96.6 32 ............................T TGCACATCGCCCGTCGCGCCGAGGTTACCGGA 99297 29 96.6 32 ............................T ACTGATGTGGTCGCGATTGAGCTGAAGATCGA 99358 29 100.0 33 ............................. GAAGCACAACTCCGCCAGCAAGACACTTATGTT 99420 29 100.0 32 ............................. TTTTCCGGCAATCTCCGCGATATTGGTCTGGA 99481 29 100.0 32 ............................. GACAAGGCGGTCCACCGGAATAACTTGTTTAG 99542 29 96.6 32 ............................T TCCAGCGCCTTCTGAAGCTTTTTGCTGGCGAG 99603 29 96.6 32 ............................G ACGGGATGTAGTAGTAGTCCCGTCCCCCTACC 99664 29 96.6 32 ............................G CCCATCTAGAATGGGATATAAAGGGTCTCGTT 99725 29 96.6 33 ............................G AGGATGGTGGCCCGCAGGATGCTCGCGATTCTG 99787 29 96.6 32 ............................G GAATACCGACATAACCTGCGCATAAGAAGATG 99848 29 96.6 33 ............................T CCGTCAGGCGAAGCGTCGCCCGCTGTCGTCTTA 99910 29 96.6 32 ............................T AGCCGCGAGAACCTCGGCCGGTGCGCCCGCAC 99971 29 96.6 32 ............................T ACGCAGCACCCTATCCTTCAAAATCACCATTT 100032 29 100.0 32 ............................. AATACACCCGAATACAAAACAGTTAAACCGGC 100093 29 96.6 32 ............................T AGCCGTGCGTATTGGCCGGGGGTGGTTCGCCG 100154 29 96.6 32 ............................T AAATATCGAGACCCGCGAACTTATCCTTCGAC 100215 29 96.6 32 ............................G AGTGTCGGCCACTTCGCCGGGGAATTTTGGGA 100276 29 96.6 32 ............................T TCACGCGGAGAATAATCTGACTAACACTTTCG 100337 29 96.6 32 ............................T AGCGTCACCAGAATCGCGACCATCCTGCGGGC 100398 29 96.6 33 ............................A CCAGGGCCTAGCCGGAGGGCCAGGAGGAAACGG 100460 29 96.6 32 ............................T ATTTTGGGAAAAACTTTCAAAACTTTTGTAAA 100521 29 96.6 32 ............................G CCCCCTTGGCCATCCCTTTTAATCAGCTTGCG 100582 29 100.0 33 ............................. TTTAGCGGCAATCTGCGCGATATTGGTCTGGAA 100644 29 100.0 33 ............................. GTTACGCTCATCAGCCATACCACCGAGCTCAGC 100706 29 100.0 32 ............................. TTAAAGGTGCCGTTACGCCCAATAAGGACGTG 100767 29 100.0 32 ............................. ATACGCCTAAAAGACAGAACCCGACCGAAATT 100828 29 96.6 32 ............................T TGTATTAGCCTCATCATAAGGATGACCCATTT 100889 29 100.0 33 ............................. AATCGGCCCCCGTGGATACTGGGGCTTATCGTG 100951 29 96.6 32 ............................G GCGACAGGGGCGCGCGCGACATCCCCGAATTT 101012 29 100.0 32 ............................. TTAAATCGGTTCTTGTTGACATGAGTTCTCAA 101073 29 96.6 32 ............................G CTCGTGGATGTGGTGTATGATATCGATTTTTT 101134 29 96.6 32 ............................T AGGGGTAGCGACAAAGGTTATTCAGTCGCTCG 101195 29 100.0 32 ............................. GATTGTTCGACGGAACATCATCCCAGTGGCAA 101256 29 96.6 32 ............................T GCGGGCGACTGATGAAATAGTCATGCAAAGAA 101317 29 96.6 32 ............................G GAACACAACGCGGGGAGGCATCCTAAAGGTAG 101378 29 100.0 32 ............................. AGTCTCGTCACAACCCGCCGCAATCACCGACG 101439 29 100.0 32 ............................. GCTGCGGTCGTTGCGGCGCGGCATTATCCCGA 101500 29 100.0 32 ............................. GGATTTTTCGCGGTACGTGTACAGTCGTCGGT 101561 29 100.0 32 ............................. ATCAGCCAACTATCAGAAACCCCCCCAAACGG 101622 29 96.6 32 ............................G TAGTGCCGCGAGAAGCGGTGACCCGGGCGGGA 101683 29 96.6 33 ............................G TAAAGCCCGAACAAGACTCGGGATCACCCCGAA 101745 29 100.0 32 ............................. CCGCTGACGACGGGTAGCTGGCCTTCTATCCT 101806 29 96.6 32 ............................T GCCGCGCCGCAACGACCGCGGCGTTAGGTTCT 101867 29 96.6 32 ............................T ACCTGCTCAAGATAGCAGACCAGGTGGCCGCA 101928 29 96.6 32 ............................T ATTGTAGATGTTCTTACAAAAATCCTGAAAAA 101989 29 96.6 32 ............................A TTCGTGGGTTCGCGCCCGTTTCGGGCTGCCCG 102050 29 96.6 32 ............................G TCTTCGATAAGATCTTCCGCATACTCGACGAT 102111 29 100.0 32 ............................. TCCACGGCCACTAAAACCTTCGATTTTTCTAC 102172 29 100.0 32 ............................. CGCAAGCGCTTCCACCATCAGATCGGCTACCT 102233 29 96.6 32 ............................G TGCGCTTAGCGTGGATTTGCGGGAAGCATTCC 102294 29 96.6 32 ............................T TTTGGCGAGAAGGCTCCAGACGATTTGGCCGG 102355 29 96.6 32 ............................T TTGGTCCGCTATTCTCCTCACTGATGTGACAC 102416 29 100.0 32 ............................. ACTAGGTGAAGTACCGATTCGAGACACCAGCA 102477 29 100.0 33 ............................. AAGGTGAGGGCTCGATTTTTCTACGACAACGAA 102539 29 100.0 33 ............................. GACCGAGTATCCCATTAGAGACCAGTGCCAGTG 102601 29 100.0 32 ............................. ATCGACAGGTGCCTTTATGGAACCTTCCCCTA 102662 29 96.6 33 ............................A CGCTTTAGTGGTGGTGGATCCTAAGAACGCATC 102724 29 100.0 32 ............................. CTCGCGACTGCCCGCTATTATCAGTGCGGCCG 102785 29 100.0 32 ............................. CTGCGGATCTTCCCTGCGTGCCCTGTCAAAAA 102846 29 96.6 32 ............................T TCGCCGGGTGGTGAAGTCTTTGAAGGCATTAG 102907 29 100.0 32 ............................. GGTTAGCCAGATTATTCTCCGAGTGAATTCGC 102968 29 100.0 32 ............................. ACGCACTTCGTGTGCACCGCATAGTGGCCTGG 103029 29 96.6 32 ..G.......................... CCTTAATATAGGCCCCGTCGGTCGGTCGGTGC 103090 29 96.6 32 ............................T AGTTGGCTTACGTAAAATGGTAGAACAGAGAC 103151 29 100.0 32 ............................. TCTAGGGGCAATCAGCTTCCCGGGCGTATTTT 103212 29 96.6 32 ............................T CGGTTCTTGTTGAGATGTCTTCTCAACAGTGG 103273 29 96.6 32 ............................T GCCGGGCTTGTTGAGCATAGGGACCAGAAAGA 103334 29 100.0 32 ............................. AAAACCTCGGCGCGCCAGGAAACGGCATCTCC 103395 29 96.6 32 ............................A CCGCTTCGCAGTACAAGACAAATTCACAGACT 103456 29 100.0 32 ............................. GAATCTAACGTTACCAGGATCTCAAAGACCGC 103517 29 100.0 32 ............................. AGTTCGGGGTCTATCTCAGGCTTTGCGCACTC 103578 29 96.6 32 ............................G CAAAACACCAATTTTAGGCGTCACATATGTCT 103639 29 100.0 32 ............................. GGCTTGATGTCCTTTTCTTCCTGAAGGATTTT 103700 29 96.6 32 C............................ CCTGCGGCCCGGCCGGTTCCCATCCTTTATAG 103761 29 96.6 32 ............................T CCTTTCGAACCTCGCTCGTGAGGCGAAGAATA 103822 29 96.6 32 ............................G TTAAAGCTTTTTGCACAATGTCATCCCGGCGA 103883 29 96.6 32 ............................T AGGGAGCCTAGCGTATTGTGTAGTACCATAAA 103944 29 96.6 33 ............................A AAGGGCGACCGGATTATGGTTTTAGATAGCAAC 104006 29 96.6 32 ............................T CCTGCCGCGGGGGTTGCGCCGACTACAGTGCA 104067 29 96.6 32 ............................G TCCAATCCGCGTCCCCAGCTTTATCCCTATAG 104128 29 96.6 33 ............................T CGGAGATGAAAGCGTGCGTCTCTCGGATGGCTG 104190 29 96.6 32 ............................G TTCACCGAGTGGTTCGGGATAATGCCTCGCCG 104251 29 96.6 32 ............................T CTTTCGTGGAGGTTGCCGACGCTTCCGTTGAG 104312 29 96.6 32 ............................T TGTCACACATTCCGGGGGCGCGGTTCCAGATT 104373 29 96.6 32 ............................G TAATCTGGCCGCCGCCTACGGAAGCGCTCCAG 104434 29 100.0 33 ............................. ATTTTCCGCGCCACCAAATGGGTTACGTATTTA 104496 29 96.6 32 ............................G CCTTAGCTTTTGCCAGGGCTGCGTATGCGTCC 104557 29 96.6 33 ............................G GGGCATGCCACTATTCTTGACTATCCAGCTCAG 104619 29 96.6 32 ............................T CGTTTCCCGGCCCCCGTATATAAAGATATTTT 104680 29 100.0 33 ............................. GTGAGCATAACTGAAGCGCAGGCGTTCTCGTCG 104742 29 100.0 32 ............................. ATTGGCTGCGACAACAATCGAGTCAATCTCAG 104803 29 96.6 32 T............................ AACAAACGCGGCAGTAGCGACAGCAGACAAAC 104864 29 96.6 32 ............................T AGCCGTCAGGGCTCTTAGCGACACCCAACAAA 104925 29 96.6 32 ............................T ATTTCGGCGTTTCTTCAAACACTTATGGCACT 104986 29 96.6 32 ............................T ATCTCATACGACCTCACAATACTCGTATGGGA 105047 29 100.0 32 ............................. AATCTTGTCAACATCATACGAGGCCGCAAAGG 105108 29 100.0 32 ............................. CTTCCCACTAACCTCACCCGCGATAGTGCCGG 105169 29 96.6 32 ............................G GTGATCCATCACTATCAGAAGACAGCTGTGCG 105230 29 100.0 32 ............................. TAAGTTCGGGGTGGGAGCCTATAAGAACTTCC 105291 29 100.0 33 ............................. TGGTAATCTGGCGCGGGCTATAGGGAGGTCCGC 105353 29 96.6 32 .C........................... GCTCGACCGCGCTTCTTTAGACCCACCTTTTT 105414 29 96.6 32 .............G............... ATCGAGAGCCGCGAACGCGTCCTTCGACAAAA 105475 29 100.0 32 ............................. TACGTCGCTAACCGGCGACAACTTCCTTACGG 105536 29 96.6 32 ............................T CTTGCCGAAGAGTGGGTGTTGTCTAGCTTGGC 105597 29 93.1 32 .............G..............G CTCCGCAAGCAGGTCGCCGCCGACGACAAGGA 105658 29 72.4 0 ..CG.....A...G.........CAC..T | ========== ====== ====== ====== ============================= =================================== ================== 146 29 97.6 32 GTATTCCCCGCGCAAGCGGGGATGGTCCC # Left flank : GGGACGGTGCGGAGCGGACCGTGGCTTCGGGACGAAGCTATGGGGAAATCGACGACGAGGAGCCCCCGGAGGACCTCCTATGATTGTGCTTGTCCTCACCGCTTGCCCTTCTGGACTTCGGGGCCATCTTTCGCGGTGGCTTCTCGAGATTAGCCCTGGAGTATTCGTTGGTCACATCTCCGCACGGGTGCGCGACTTACTCTGGGAGCGGGTTCTGGAGCTGGCGAAGGACGGGCGCGCCATCCTCATTCACTCGACGAAGGGCGAGCAACGCCTGGCTTTTAAGGTTCACCGGCATGACTGGCAACCGACCGACTTCGACGGAGTGCAGCTCATGCTCCGGCCAGCGAAGCCCTCTGAGCAGCCCACCCCAGCCTTACGGAAAGGGTGGAGCAACGCCAGCCGGTACCGGGCCGCAGCACGCCAAAAACGCGATGGCTAAACGATCCAAACTACGTCAGAATGGGGGTCCGTCGACGAAAAATCCCTGGTCAGGAAGA # Right flank : TCAGTTCGGCCACTGCCGATAACATCGCACACCTCGGGCACCGAACTAGGGCGAGCGGCACCTCTCAAGCGATGTTGCCGGTCGTCGCGGGGGTGTCCACCGCGATCACCCTCGATATGAGCGCGATCGTGTCTTCACATACCTGCGCGACGGCCATCGACGGATCCGTTCGCCTGCGTCGCATATCACCCTCCTAACTTGGGAGGCAACGTCATTGGCGCACTCGTCGAAGCTGAAACCTTTGTGACACATGGCGCTGTTGGCGTCAGCGCTGCCGTAAACACGCTAATCGCCCGCGGATTCCACTCCTCAGACCGCCCTCATCGGCGCGGGCTCGGCGCGCCTTGTCATCGTGATCGTTCTCGGCGCGACAACTGTAAAAGCAATTGTTCCTCGCAGCCGGCGGAGGCATGATTTCCTTCACGAGCGTAGTTGTTGCGGCGCCCGTGGTGCTGCCAATTGTCCTTTGGTCAGTCATTGCAATTTTGCGAAGCAGCGTC # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.46, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCAAGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCAAGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //