Array 1 1495-3504 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALEE01000725.1 Melaminivora alkalimesophila strain CY1 1000725, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1495 28 100.0 32 ............................ ACCAAGACCGGCCGTGTTGCGCGCCTGATCGA 1555 28 100.0 32 ............................ GAGCCTCGCGCATCAGTCGCGCATCAGCTGCG 1615 28 100.0 32 ............................ GCATCCAGGCGGTCAGCCGCAGCGCCTCTGGT 1675 28 100.0 32 ............................ GAGAACTGGAAGGACGTGCTGACTGCTGCACT 1735 28 100.0 32 ............................ ACAGCCCCTGCCACCGTGCCGATCATCTTGTT 1795 28 100.0 32 ............................ AAATGGATCGGCCTCGCGGGCCATGGCGATGA 1855 28 100.0 32 ............................ GACCCTTGCTGCAGCGGGTGCATGCACCGTGG 1915 28 100.0 32 ............................ ATGCAGGCTATGGCTGGGCTCCTGGGCCTGTC 1975 28 100.0 32 ............................ GCTCGCGCACGGCAGCCCCGCGCAGCCTGGGC 2035 28 100.0 32 ............................ TACAGCCCGCCGTGGCAGCTGGCGCGGGTGCC 2095 28 100.0 32 ............................ AGGCCTCGCGCATCAGTCGCGCATCAGCTGCG 2155 28 100.0 32 ............................ GAACGTGTGCTGCAGGTGGAGCGCCTGGTGGG 2215 28 100.0 32 ............................ GATTAGGCGACACGCCATGGGCGCTCACTGCG 2275 28 100.0 32 ............................ TGGTGGCCTTCTCGTTGGGCTGCAGTCCCAAC 2335 28 100.0 33 ............................ CAAGGAGGCGAGCCATGGCTGACCGCCTCGTTC 2396 28 100.0 32 ............................ TGGACGCCGCCCGCGCAGCCAAGGAAGGAGAG 2456 28 100.0 32 ............................ AGCTTGCCAGGCCCTTTGCTTTCGTCGGCCCC 2516 28 100.0 32 ............................ TGATTGCCCCGGCTGGCCGGCGCAGGGGCACG 2576 28 100.0 32 ............................ TTGCTCAGCAGGCGCTGCCTGGCCCGCTTGGA 2636 28 100.0 32 ............................ TGATTGCCCCGGCTGGCCGGCGCAGGGGCACG 2696 28 100.0 32 ............................ ATCGTCGGGGCGCGAAGGCCAAACAGCGTCAA 2756 28 100.0 32 ............................ CATGACGCGCTTGTATTTCTTCAGGTAGTCCA 2816 28 100.0 32 ............................ AGCCCGGCTCGCATGGGCCGGGCGCCGAAATC 2876 28 100.0 32 ............................ ATCCGTCGCGCTCAGCCGCCGGAGGATGAAAT 2936 28 100.0 32 ............................ AGCCCGGCTCGCATGGGCCGGGCGCCGAAATC 2996 28 100.0 32 ............................ CATCCACCGACGCCGAAATCGCCCTGACCGAG 3056 28 100.0 32 ............................ AGCCCGCCGGTGCACAACAACTTGCGCCGCAG 3116 28 100.0 32 ............................ GAGCTGATCATCCTGGCGCCCACGTTGGAGGT 3176 28 100.0 32 ............................ CACGAGGGCTACCGGGGCGAGGCGTACATCCC 3236 28 100.0 32 ............................ TTGAGCAGGACGGGCTGGGCGGCGAGTGCTTC 3296 28 100.0 32 ............................ TTGATAGGGTGCCGCGCCCACGGCTCACGACC 3356 28 100.0 32 ............................ CACGAGGGCTACCGGGGCGAGGCGTACATCCC 3416 28 100.0 32 ............................ ATTCCTGCGCCCAGGCTTCCTCATGCTCCTCC 3476 28 100.0 0 ............................ | G [3502] ========== ====== ====== ====== ============================ ================================= ================== 34 28 100.0 32 GTTCCCTGCCGCGTAGGCAGCTCAGAAA # Left flank : CAGGCGTTGGCAGCCCTGATGGAGCAGAAATGGCTCAAGGGCATGCACGATCACGTGCAACTCACTCCCCTGGCGGCCGCCCCATCGGACGCCCCGCACCGCTTGGTGCTGCGCCGCCAGTTCAAGACCAGTGCGGAGCGCCTGCGTCGACGGCGCATGCAGCGCAAGGGGGAAACCGCCGAGCAGGCCGCAGCCAGCATTCCCGACAGTGTGGAGCGTCGCCCTGATCTTCCCTTTGTGCAACTGCGCAGCAGGAGCACAGGTCACCCGTTTTGCCTGTTCGTGGCTCACGGCCCCGTCTTCGAAAAACCCCTGACAGGACGCTTCAACGCCTACGGGCTGGGACCGTTGGCGAGCGTGCCCTGGTTTTGACCCTTTTTTTGGGCCCACGAAAAGTTTCTTGCAAATCAACGGGTTGCGCAGTCTCCAGGAAATTCACCATTCGGCCTGAAAAAGCATTTTGTTCTTTAAAAACAGAGACTTAACTGTATTACAGTGCA # Right flank : ACCAGCCTCGCCGTGGTGGGAATATCCTCCAGTTCTTGGCGAGCGTGGAGAGTCGGCCGCTGCTATGCGAGCACATCGTGCGACTGAAGCGACTGGTCCCACCAAGTCACCCTGGGCCAGGGCCCTCAACCCTGCGCGCTGCTGCTCGTCCGCAAGCGTGCGCCCTGCGGTGCATCGGGTTGGTAGTCGAGCACACGGAATTCGCCCTGCGCCAGCGCGGGCTGGCGGCGCAGCATTTCCAGCGATGCGCCCATGTCGGCCAGGCCTGCCGCCCAGTGTTCGGTCATCGACAGGCGCGAGAACTCATAGCCCTTGTTTGCGCTCTCGTAGGGCTTGCCCCGGTGGATCACGTGCACCAGGGCGACCGAAGGGTCCTCGGTCTGCGCCAGCAGGCGGCGCACCTCGGCGCTGCGCTGCTGCTCGGCCGGCAGCAGCGCCGCCATGTCGCGCAGGCGCTGGTGCAGCGCCTGGCGCTCCCGCACCCAGCCGCTCACGGCGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGTAGGCAGCTCAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 11720-11572 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALEE01000277.1 Melaminivora alkalimesophila strain CY1 1000277, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 11719 28 100.0 32 ............................ AGATAAGCAATCCGCAGGGCCTGCGGATTGGG 11659 28 100.0 32 ............................ TTCGGAGCCTCCGCACTGAGTGCGGACCCTGC 11599 28 71.4 0 C...............G....CTTA.CG | ========== ====== ====== ====== ============================ ================================ ================== 3 28 90.5 32 ACGCTCCACGCGCGCGCGGGGGGACCGA # Left flank : TTCAAGAGCGCCCAGGGCAGGAACGAGCTGGTGCACACGCTCAACGGCTCGGGCCTGGCGGTGGGCCGGGCGCTGGTGGCGGTGCTGGAGAACTACCAGAACGAGGACGGCAGCATCACCGTGCCCGAGGCGCTGCGGCCCTACCTGGGCGGCCTGGAGCGCCTGGGGGCGCAGGGCGGGGCGGTGGCCTCGGCCGGCTGAAGGGCCGCACCGCGGTGGCCGTGCACCCCGGCGGCCTGGCTTTTTGCTGCTAGAATTGCTGGCTTCGACACACAGGAGAGGTGGCAGAGTGGTCGAATGTACCTGACTCGAAATCAGGCGTACGTGCAAGCGTACCGTGGGTTCGAATCCCACCCTCTCCGCCAGGATTGAAGCCTAAGTGATTGATTCACTTAGGCTTTTTTCTTTGCCATCCAGCTCTACCCATGTTTCTACCCATGTCGCAAACGTTGGTAGCGGTGGGATCAGGCGCTTTCGTCGCGGTCTATGTTGGGCATAGG # Right flank : GGCAAATCCCGGTTTGGCCGGGCGGGGGGGGGAAACTCTGCGGTTCTGTAGAGTTTTACGATGGTCTCGCAAAAGGCGCAGAACTGCGCTCATCGGCGGCGCCATCGCGAAACGGAAATAGACGAATCGGCGCGTCCTGTGGTAGCCGCCAAAAAGCGATAGCAGGGAAGCAATGTCTGACAATGGTTTGCGCGCGAAGGTGCCGGTTGCTGCCACAGATTCGAGCTGTACGGGTATCAGTATTTCGCGATGGCTCACGGCCAGAAAATCGCAGCTCAGGCGCGATTACCCGGCACCAGGGCAAGGGGGTGCGCGAAGTGATGCACCCTTGCCGGCGCAAAAAAGCCCGCGCGCGGCGGGCCTGGGGTGATGGCGATGGCGGATCAGGTGCTACGCCACACCATCACAGCGGGCGCCAGCTCAGCGCAGCGGCGCTCCAACGCCTCCGGTGTCTCATCGGTCAGGCGGTCAATCTGGGGGCCGGCGGGGTAGGCGACAAA # Questionable array : NO Score: 4.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.53, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACGCTCCACGCGCGCGCGGGGGGACCGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [1,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //