Array 1 23768-23373 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANPS010000017.1 Pseudomonas otitidis strain 12M NODE_45_length_85286_cov_26.4513, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23767 29 100.0 32 ............................. CCCGGCTCTGATCTCGACGCGGTGTGCTACGT 23706 29 100.0 32 ............................. CGGTGAACGCCCTGATCAATGCCGCCCTGTCG 23645 29 100.0 32 ............................. GGCAGCGCCTACGGCCAGGACACCGATGACGA 23584 29 96.6 32 .............A............... TGCCATGGTTGTTCCTGTCGTGATGACCCTGC 23523 29 96.6 32 ............................T AACACCAACCCCGACGCAGATGGCGACGGGTT 23462 29 93.1 32 ..............C...C.......... GCCGGCCTGTCCGACACGGCGGCCCTGGCCAT 23401 29 86.2 0 .............T............TAC | ========== ====== ====== ====== ============================= ================================ ================== 7 29 96.1 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GTGGCCGCCGACGAGATCGTCAGCGCCGGCCGGGTATTCCGCGCCCTCTACACCACCGGCCGGGCCATGGGCATGGCCCGGCGGCTGGCCGCCACCCGCGCCAACCAGGCAGCGGAGCGCGCTACGGGCGTGGACCTGGCCGCCGAATTGGGCGCCACCCAGTGGCTCGACGGGCCCGACCTGCCCGAACCCCAGCGCCGGCAATACGAGCTGCAGCAGCGCATCCGCGCCCACCTCGTGGCCAACAACTGGCCCGAGGGGTTCAGCGGCCAGCAACTCATCGAGGCCCTGGCACTGATCAACGACCGCGGCACACAGATGGCCGTCGGCAGCGCCCTGCAACTGCTGGGCTACAGGCGCGTGCGTATGGGCTCGGCTGGCCGACCCTATGCGTACAAGCTGACGGTGGTGCCGGCGTTGTGATGCCGAGGGCAAGCTGAGAAATCGGTAGCGAATTCGGCAGGGAATTTTCCTTTTTACGCCAGTGGTTTAGATTTGGT # Right flank : AGGCTCTGATACATTCAGAGCCTTTTGGACCAAGGAGTGGTGTGATGACGTGCAGGCAATGCGGAGCCCCCGCAACGGATGCCGACTCGGGCCTTTGCCCTGAGCATTTCGAAGAGCAGCGCCAGGCTATCGTGGGGCGGCTGAAGCAGCCCAAGCCGGTTGCCGCATCCCCGGCGCGCCCGCGCGAGCGGGTGCCGTTGTGGGTAGCGTTGCTGCTGGTGGTGATGACGCTGGTGACCGGCATCTCGGTGGTGGGCATTCGTACCACTTCCAGCAGCCCGGGGCTCTGGACGCTGATCGCGATGGTCTGCTCGGTGCCCACGTTCCTGCTTTGGCGCTATTTCATGCGCCGCTACCCGAAGGCGCTATGGCCGGTTGGTTTCTCGTTAGCCGGGTTGGTGCTCGTTGCTGTCATGGCCAACTGGGCCTACGTGTTTGTAACCACCCCTGCACAATCGGAGCTGGTCGGTACCCGGAGCCCCAGGGAGGCAGAGCAATCC # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 58028-58362 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANPS010000021.1 Pseudomonas otitidis strain 12M NODE_52_length_76722_cov_35.4519, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 58028 29 100.0 32 ............................. GTCAGCAGCCTGCCCGGCACCCTGCAGCCGGA 58089 29 100.0 32 ............................. TCGTTCGCCAACGGCGTGTCGGTCGCGGGCGT 58150 29 100.0 32 ............................. AAGGTGGATTGGAACGACCTGCATCAGCAGTG 58211 29 100.0 33 ............................. ATCTTGGAGGCCAGGACCACCTCCATTCCGCAC 58273 29 100.0 32 ............................. CCGGAGCAGACCCGCGTCGGCCAGGTGATGCA 58334 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 6 29 99.4 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GAAGAGACCATCCTCCCGCGCCTTTACCGCGAAGCCCCGGTCAACTCCATCTGGGAAGGCTCCGGCAACGTCCAGTGCCTGGACGTCCTCCGCGCCCTGTCCAAGGAGCCCGGCGTGCTCGATGCCCTGTTCAGCGAACTGGGCGACGGCCACGGCGACGCCCGCCTCGCCGCGCAGATCAACAACCTCAAGGCCGCCTTCCACGACACCGCCGACATCCAGTACCGCGCCCGCCAGCTCACCGAAGACGTCGCCGTCGCCCTCCAGGCCAAGCTCCTGCTGGAGGCCGGCAACGCCACCGTCTCCGACGCCTTCATCGCCAGCCGCCTCGGCGGCAGCGGCCGGGTCTACGGCACCCTCCCGCGCGGCATCGACGTCGAAGCCCTGGTCGCCCGCAGCACCCCGCACCTGGCCTGACGCCACGCTGGCAACAGGGGGAAACAGCCGGTAGATTTCCCGCTGCCGGCTTTTCCCTCTGGGATCAGCGGGTTACGGGAAGG # Right flank : CACCCCAAACCGGAATGGCCAGCCCCACTGCGGGGCCTGCGTAGGATGGGGTGAGCTCGGCGAACCCCATCACCCGGCCGCGCCCCGGCCCTAGGCCGCCCGCTCCGCCAGCCGGCGCTGGCCGGTCAGCGCCGTGACCACGAACAGCGCTGCCGCCAGGCTCAGCGCCAGGGGCAGACCGTGGGGGCCGGTGCCCATCAGCGCGCCGCTCAGCAGTGGCCCCACCAGGCTGCCGATGCCCCACAACATGCCCACGCAGGCGTTGGCCGTGACCAGGTCCTGCCCGCTGAAGCGCTCGCCGATGCGCACCAGCGCCAGGGTGTAGACGCCCCCCGCCACCGCCCCCAGCAACACCAGCCCCGGCCACAGCAGCGTGGGCCGGGTGATCAGCCAGGGCAGCGCCATGCCGATGCCCAGCGCCGCCACCCCGCAGACCAGGTGCAGGCGGCCGCGCTCGGTGCGGTCCGACAGCCAGCCCAGCGGCACCTGGCAAACCATGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 68741-69440 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANPS010000021.1 Pseudomonas otitidis strain 12M NODE_52_length_76722_cov_35.4519, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 68741 29 100.0 32 ............................. TTGCTCGGCGCACTGTTCGGTTTCGCCCTGGT 68802 29 100.0 32 ............................. GCGATGCCTTTGGCTGGTAGCAGGTCATCCAG 68863 29 100.0 32 ............................. CTGAGGACGGCAATCAGGGGGATGCTGATCGC 68924 29 100.0 32 ............................. CCGGGGATAGTCCGAAAGGACATGACAGACCG 68985 29 100.0 32 ............................. GCGCGTTCAAACGGCCGCATCGACGGCATCGT 69046 29 100.0 32 ............................. TCAGTACGTTGAGCAGGTCGGCGGTCTTGTGG 69107 29 100.0 32 ............................. GCGGCCTCGTTGCTCGATGAGCTGACCAAGCT 69168 29 100.0 32 ............................. AACGCGCCCCAGATCCATGTCGTGCAGTCGAT 69229 29 100.0 32 ............................. GACGTGGACGGCTTCGATACGCTGAAGGGGCG 69290 29 100.0 32 ............................. TTCGCATCACCCGCGAGCAGGGACACCGGCAC 69351 29 93.1 32 .........................T..A GAAGAGCCAACCAGACTGCCGAAGGTCGAAGC 69412 29 75.9 0 C..........AAA...........G.GT | ========== ====== ====== ====== ============================= ================================ ================== 12 29 97.4 32 GTGTTCCCCACGGGCGTGGGGATGAACCG # Left flank : GGGTCGCATCATCCCGCTGATCGAAGAGGTGCTCGCAGCCGGTGGTATCCACCCGCCCGAGGCGCCGCCGGAGTCCGTACCGCCGGCCATCCCCAACCCCGACAGCCCCGGCGATGCCGGCCACCGGAGCCGGTGATGGCCTTTCTCACCGTGGTCACCGAGAACGTCCCGCCACGCCTGCGCGGGCGCCTGGCCATCTGGCTGCTGGAGGTGCGCGCGGGGGTGTACATCGGCGACGTCTCGCGGCGCACCCGGGAAATGATCTGGCAGCAGCTCGAAGCCGGGTACGAGGACGGCAGTGTGGTCATGGCCTGGGCCAGCCAGAACGAGTCCGGCTACGACTTCCAGACCCTCGGCAGCAACCGCCGCGAACCGGTGGACCACGACGGCCTGCGGCTGGTGGCCTTCCTGCCACCGACCACCGCAGATTCCACACCCAAATAATCGGTAGATTTTCAGGAGGTGATTTTTATCTTTGAGAACAAGGGGTTGCAGTTGGT # Right flank : TCGCGACCCTACCGCCGCTGCCAGATCTTCCGGCCGCCCTGGTCTTCGGTCACCAGGTAGGGGGCGCTGAAGCGGTAGCGGGTGGCGGGCTGGTAGTCGGTGCCGCCGTCGGGGCGGACGAGGAGGATGCCGTCGGTGGTCTGCCATTGGCCGGCGTACTGGAGGGTGCCGTCGCTGTCGTAGCTCCAGTCGGAGCCGCCGCCGACGGAGCGGCTCCATTGCTCGACGCGGCCGTCGGGGGCGAGGTGCAGGGTGAGCACCGTGTTGAAGGAGGCGAAGCTGGCGCCACCGCTGTTGATGATGTCTTCGTGGACCCAGGTGCCGACCAGCGCCGGGTCCAGGGTGCCGGCGCCGGTGCGGGTGGCGCCTGTGGCGTGTGAGGGGCTGCGCTGGAACAGCGCCTGGCGCTCCAGCACCTGGCCGCTGACGGGGTCACGGGCGGCGAGACGGGCGTTGAGCTGGTCGTTGCCGTAGGTGGCGGCGAGGGTGGCGATCACCTG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //