Array 1 421130-417970 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFUN01000001.1 Campylobacter gracilis strain NCTC12738, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 421129 36 100.0 37 .................................... TTTAAACCAATCGCTCCAAAGATAAACTTTATGAACG 421056 36 100.0 37 .................................... CTATAACGGTAAAGCCGGTTTTCATGAATTCCTTAAG 420983 36 100.0 37 .................................... TTTTAAACCAATCGCTCCAAAGATAAACTTTATGAAG 420910 36 100.0 42 .................................... TTTATAGGTCTTAAATTTCGCAATAAAAACCTGCTCCATTGG 420832 36 100.0 40 .................................... AAAACTCCCATTCGCCACCTAACGAGTAAGCGCAGTTGCG 420756 36 100.0 38 .................................... GACTTGGCAAAAACCGCCTTCGGTTACTTCGTTTAAAG 420682 36 100.0 39 .................................... ATTTTTCTCCTTTAAAAAGGACTTTCTTTTTATCTGCAG 420607 36 100.0 40 .................................... ACCGTTCTCGAGTCCGCTCCAATTGGCGAACCACACCTCG 420531 36 100.0 41 .................................... CCAATTCGCCCCAATCCTCGTTAAGGAATAAATCTTGTCGG 420454 36 100.0 37 .................................... ATATTAGCACAAAAATCAGTGTGACCCTCATTTATGG 420381 36 97.2 40 .................T.................. GTCGTGCTCAAACCTCTGTCCTAAATGAACCTGTACCATG 420305 36 100.0 36 .................................... AAGTCTCCTCTTTGCCCGACCTTTCCGACGAGCAAG 420233 36 100.0 42 .................................... CTCACCAAGTATTTCCCATTAATCAACACGGATGGGATATAG 420155 36 100.0 41 .................................... ACATGCACCCTAGTTCAGCCTTCTTTCTCATTTTATTCTCG 420078 36 100.0 45 .................................... GATGTCTTGTATCTCTGAAGTTGTTACGTTTCCTAGTACTCTAGG 419997 36 100.0 38 .................................... CAGTTATCTTTACTAGCCTCATTATCCTCACATCTAAA 419923 36 100.0 38 .................................... CAGTTATCTTTACTAGCCTCATTATCCTCACATCTAAA 419849 36 100.0 41 .................................... ACTCTGTCATACACTAGGCTATAGAAGTCTTGTCTTTTAGA 419772 36 100.0 38 .................................... CTCAATTATCTTACCCTCTTTAGTGGTTCCGTAGTCCA 419698 36 100.0 39 .................................... AGGTCATCCTCACTCTCAAATATGATGTTCTTAATCATA 419623 36 100.0 38 .................................... GTTAGCTTGTACGTTAATAAGATAGCCTTTAGAGTACA 419549 36 100.0 37 .................................... GCTTTTCTTAGCATCTTTCAGGTACTTTTCTACTGCA 419476 36 100.0 40 .................................... TTTATAAACGCCTCATACCCTCGCCCAAATTTTGCGTCAA 419400 36 100.0 44 .................................... AATCATAGGCAGCACTCACTTCTAGAAGCATTGCTACGTCTTGA 419320 36 100.0 44 .................................... AATCATAGGCAGCACTCACTTCTAGAAGCATTGCTACGTCTTGA 419240 36 100.0 39 .................................... TCCCAACTTTACTGAGTTACGCATTTTATGCTCCTTGAA 419165 36 100.0 37 .................................... GCTTTTCTTAGCATCTTTCAGGTACTTTTCTACTGCA 419092 36 100.0 41 .................................... TTTAGGAAATGCGCTGACTCGTCCGCATAGTGTTTCACCGA 419015 36 97.2 43 .............C...................... GCCTATGCTGTAACTGCTATTGCACTCGCCGGCTGAGATCGCA 418936 36 97.2 41 .............C...................... AAGCCTTCCAACCGATTAGAAGCTCGCCAGTTGGGAGACGA 418859 36 100.0 41 .................................... CTTAACATTGAACTTCTCCGGGTCTATCATCATTGCTATTA 418782 36 100.0 43 .................................... CAGCTTGAGTAAGCTTTTTTGCCATAGTTCTCTCCTTTTACGA 418703 36 100.0 43 .................................... CTCAAAAGAACGATATATCTTTTGGCATCTGTCAGCGTCAGAA 418624 36 100.0 42 .................................... TTTTCGGCTAGAGCAATAGGATTTTGCGCATAATTAGGCTGA 418546 36 100.0 39 .................................... AAGCGCACGATTCTCATACGCATTTACACGAACGCCCTA 418471 36 100.0 42 .................................... CTGACCGTCTTTCTTAACTCCGAAGTCTTTGTCTTTGTTAGA 418393 36 94.4 42 .................T.....G............ CTCCACAGTTTTGATCTAAGATTTTTTCTAATCGGTCTAGTA 418315 36 97.2 45 ...A................................ GTCTGGCATTTTTTCTCCTTTCTGAAAAAGATTAATTTGTTAAAA 418234 36 100.0 39 .................................... ATCGATAAGCCATATTTACTGCCGCAAAACTCGATTTTA 418159 36 100.0 42 .................................... AAGATATGGTAACTTAGCATAGTAAACTCCTTGAATTAATTA G [418135] 418080 36 100.0 39 .................................... GTTAATCCTATCTTTTAGATTTGCCATTGTATTTTCCTA 418005 36 97.2 0 .................................G.. | ========== ====== ====== ====== ==================================== ============================================= ================== 42 36 99.5 40 TTTGATTAGAATTTCCCCGATCTAGGGGATTGAAAC # Left flank : CTTGTATGGCTAAAAGCGAGAGCCTAGGCGAAGGTGAGATCTTTCGTTCCCCTGGCACCTACGTCTAAGTCCCATTTTTAGGGATTTGATTTTCGGACTTTTCTTAAATTTAAAACCCCGAATTTAGCGCACTTTTATATTCTATTAAGCTTTAAAATGTCCGCAAAGCTTAAATTTCGCTCGCGCCAAAAACCCTTTCTCGGACTTCCGCTATTTAGCCTATTTTTAAAGCCCCATTTCTAGGGCTTTTTACGTTTACGAAATTTAGCAGAAATTCGAAAAAGCCTAAAATTTTAATTTTTGCGTTTAGATTTTCGGACTTTTGCGCTTGTGTAAAGACGCTTAAATCCGTACTTTTAAGCCCGCTATAAGTAAAAACCTCGAAATTTGAAATTAATTTTTCGCCTCTTTCTCGGACTTTTTCGCGTTTTGTGATATAATGGCGCTCGCAAATAGTTCTTTAAAAACTCATTGTCAATTTGAATGAGGTTTTTGGGCTG # Right flank : AAACGGGTTTTGCCTCGTATGATGCTGTATGATCACGCTGATTTGATTAAATTTCAAGATATACGACTAAAATTTAATGGATTTTTTAAAAGCACTCCGTAAATTGACAGAATTTGACAACTAAACTCCTTATAATCACGCTCAAAGTTGATATGGCGGGTTTGAATTCTATGAATAATTTTGTTATTTTTCGAAAAAGAATTTTAAAATAAAGGAGAAAGTATGAAAATTTTGTTTAAAGTGTTTTTGCTTGGTTTGATCGGAGTTATGTTTTCTGGTTGTTTTATCGTAATGCCGCCTGATAAAGAAACGGTAATGGCTCAGCAACTAGATGTTTGGTGTATCCTTAGAGAGAATAAGGATAAGGAAAGATATGAGGAATCTAAACGTAAGGCGGAGTCGTTCCTTGATAAAGATAAATATGGAGATAGAGTTCAAATAGCTCCGAGAGGAGAGTATAGCGTTTCGCTATTAGATAGAGCTTTTAGTGGTGACAATCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTGATTAGAATTTCCCCGATCTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.60,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 861117-861401 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFUN01000002.1 Campylobacter gracilis strain NCTC12738, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================== ============================================= ================== 861117 22 81.8 45 T.TAT................. AGCCTGATAATAACAATACTAAGCCTAATAAACCCGAGTAGAATT 861184 22 100.0 43 ...................... TTTCTTCGAAAGGAATTTCTCCGCCGGTGCCCCAGGTAGAATC 861249 22 100.0 43 ...................... TCATCGAGCAGCAGCTCTTTCGTATCCCACTTTTGGTAGAATT 861314 22 95.5 45 .................A.... TTCTGCCACTGCATTTATAGCGTCCCGTAGAAATGTGGAATAATT 861381 21 77.3 0 .TG...T-....A......... | ========== ====== ====== ====== ====================== ============================================= ================== 5 22 90.9 44 CCATCCCGTTGGGAATTGAAAC # Left flank : CAAGCCGCGCGAGGTCGCACTTGCCGAGCGCGAGGAGGCGGTAAAGAGCGAGCTGAAGAATTATTTCAAGCCCGAATTTATCAATCGCCTGGACGACATCGTGATCTTCAACGCCCTAAACGAGGACGATCTCATCAAAATCGTGGGCATTATGTTTAAGAGTCTGCAAAAAACACTCGCAAACCGCGGCATTAACGCGAGCCTAAGCGAAAATGCCAAAAAGCTCATCGCCTCGGCGGGCTTTGATATCGAATATGGCGCAAGGCCGCTACGCAGGGCACTTTACGATCTAGTGGAGGATAAGATCGCCGATATGATCCTAAGCGACGATATCAAAACCGGCGATCGGATCGAAATCGGCGCGCGTGACGGCGAAATAGAGATAAAGAGGGCAAAGTAAAATTTAGCGGAATTTATCCTGCGGGGTAAATTCTGCGCTTCTGCTAAGTAAATTTGGCGAGATAAATCTAATACTTTATTAATATAAATTGGGCGGGTAA # Right flank : CGCCTAAATGGGCTTATTGCACGATTCGCGTAGGAGGTAGAATTTATCTTGTTGAAATCAAAACGGATTTACGCGATACGCCTTTTGCGGCGGAAATGGGTAGAATTCTCATCTCGCTATAAAATTTAAAAAGATTAGTTGTGGCTGGGATAGGATACAATATGGGGCACTTATATGAAATTTCATTCGGTTTCAATTCGCCTACTAAATATGTTAAATTTATGGATTACTAATGAAATTTTGGAGTTACTCACAAATTAAAATTTTAACGAACTGTATATTTGCCGCAATATAAATAGATTTAAATGCAACTTATTTAGTAGCAAATTCCAAAATATTTGTAAAAATGCACGCTAGGGATCTTAAAAGCTAAGTTAAAGTAAGAATTCCGCATTAATTTCAATTAAATTTACGCTACAAATTTAAGATCATGTGCCAAAGTTAGAATTTAAAATTAAATTAGATGATACCAAAGAGGCAGAAAGATGGAAAAATTTTTA # Questionable array : NO Score: 5.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:-0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCATCCCGTTGGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : NA // Array 2 862844-863200 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFUN01000002.1 Campylobacter gracilis strain NCTC12738, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 862844 30 86.7 33 T.C.C...T..................... CAATCCGGGCGTTCGTATCGGAAGTGAAAACGG AT [862854] 862909 30 96.7 34 ........T..................... AGCACAAATGGCACGCTAGCGATATAAAAATACC 862973 30 93.3 37 ...T....T..................... TGAGCGACCGCTGCCCGATCGAGGTGAAAAGGGTAGG 863040 30 100.0 35 .............................. CGCTTCGAGTCTGCACGCCGGTGGCCTTTGCTTGG 863105 30 100.0 36 .............................. ACTACTGGAGCGCATTTTAGGGCATATAAGGATATG 863171 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 95.6 35 GTAGAATTCCATCCCGTTGGGAATTGAAAC # Left flank : CGGCGTGCGAGATCTTTTTGCCGTTGTTTTTGGCCTCGACGGCATTGTGCAAAATGTTGAATATATCGCTCGTTTCTAACATATGAAAATTATACAAATTTATTCGTTAATTATACATAAAATCGTATAAAATGAATAAAAATCGTGTTATTCATAAGTAAAAATAGCAAAACGCTTCGTTTATCCGTATGAATTATACAGAATACTGCATAAAATAAACATAAAATTTTATAAAATTTTGCATATTATGCCGTAAAGATGAACCAGCTTGCACAAACAGGCATATTACAGAACGGCACATTAAATTTTAAAACGGGGATAGATGAAATTTTACACATCGAAGCTTTTGGGGTTTGATTTTTTTTGATCGGTTTTGGCAGCAATTACAAACAAGATGTAATTTTACCCTATGCCGAGCCATATCTGCCAGTACAAAGAGCGTTTCAATTCCTAGTGGAATAGAATTCTACGGAAAGGCGGTGAATGCGGGATATGTGAGT # Right flank : TGCTCTATTTAAAATTTCATCTTTTCCTCTTTCATAGTAGCATTCTATAGAATTTATCGAGCCAAATCCTACCCGATAAAAATTTTTACCAAACAAAATTCCGGCTTAGATTTTAAAATTTATCGAGCAAGGTTCTGCGCCTCAGAGCTTAGAATTTTAAATTTAAGAAGCAGCGACTTCAAGCTGCGTGGTTCGAAACACGAGGATTTTAGATTATAAAATTTTGAAAGGTCGGTAGGATTAGAATTTTAAAATTCAAAGTCAATGATCGAAATTCCAAACCGCGCAACTTGAAATTTCAAATCTGAAGCGGAAGCAAATTTTAAGATCGTTCCAAAATTTACCTCTTTTAAATTCACATATCTCAAGCTCTATTCATAAAATTTTACGTATTAATTTACGTAAAATTTAGCTGAAAAACAATGCTAGTATAAGCTTATCCGCATTAAATTTTATCTCTTCTTTTTAGAATAAAAACCGCCACGGACGCGATTATTAGC # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:0, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAATTCCATCCCGTTGGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.30,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : NA //