Array 1 1268-1120 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVWF01000165.1 Pseudomonas denitrificans (nom. rej.) strain 1269_PDEN 874_41227_747083_132+,...,497+, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1267 28 100.0 32 ............................ AGGTCGAGGTGGGCTCGGCGGCGATGATCGAT 1207 28 100.0 32 ............................ GGTACGTGGTTTCGACCAACAGCACTGCCCAA 1147 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : TAAAGGGGCGGTTGCAGGAGCTGAGTGCAACACGGTCATTGAATTGAAACTGGAGCATCATGCCGCATAGCCATGGCCTTCTGCATCACCTCGTCCATAACTTCGATTGGGCATTTGAAGTCGAAGCGCTTACGCGGTCGCATGTTCAGTTGCAGCGCAATGGCGTCCAGCTCCTCCTGGCTATGTACCGACAGGTCTGTGCCCTTGGGCAAGTACTGGCGAATCAGGCCGTTGATGTTTTCGTTGCTGCCGCGCTGCCAGGGGCTGTGCGGGTCGCAGAAGTAGATCGCCACGCCGGTTCTTTGGGTGATCTCGGCGTGTCGCGCCATCTCCCGGCCCTGGTCGTAAGTCATGCTCTTGCGCATCTCCAGCGGCATGCTATTGAGCGCTGCGCTGAAGCCTTCCAGCGCCGAGGTCGCCGTCGCGTCGTTCATCTTCACCAACATCAGGTAGCCACTGGTGCGTTCCACCAGCGTACCGACGGACGAGGCGTTGGCCTT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1143-1530 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVWF01000169.1 Pseudomonas denitrificans (nom. rej.) strain 1269_PDEN 878_48188_839021_132_,694+, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1143 28 100.0 32 ............................ GTCAGGGTCGTGCATGACTCCGATGTGGTGGC 1203 28 100.0 32 ............................ CGTCCAGAACGTCACACGCTCGCCGTCGATGT 1263 28 100.0 32 ............................ AACCGGAGCCTTCGGGCCGCGTTGGGATCCAC 1323 28 100.0 32 ............................ TTGACTGCTGGGGCCTGACGCTCATCGCGCGG 1383 28 100.0 32 ............................ GCGACCCTGGCCAGGGCGGCGTCGCGCTCTGC 1443 28 100.0 32 ............................ TTGAGCACAACCGGCTGAGCCAGCTGGTTGTC 1503 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : AGACAGATGATCAGCTCCTTACGCAGCTCACCCACTGGCAGGGCATAGATCGCGTTGTAGATCGTCTCGCGACAGACGTAGGCATCTCGCAGGTTAGGTATGTTCATGCTGCGCAGCTTGCCGGCAATCTGCTCGGGAGACAAACGCTCACGCAGCATATGGGTCACCAGTTCGAAGCGCTCGCTACCCGGCAACAGTTTTCGCATCGGTCGACAAACCTGGCGGCGGGCCTGCATTTGCTGCTGGGCCAGGCGGGCCGAGTAGCCACCGCAAGCACCTCGGTTACGGCGCAGCTCACGGCTGATGGTCGAAGGGGATCGGTTGATCAAGCAGGCAATCCTGCGCAGGCTGAAGCCTTGGGTACGACCGATTTGAATGGTGGCGCGCTCTTCAACGCTGAGTTCGGTATAAGACATAGGGGCAGCACCGTACCGGAAAGGTCAGGTGTTGCACTCAGTTTTTGCCGCCGCCAGGAGATTGCCATGCTGATCAAACTTCCC # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTGGTAGGCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 11563-10396 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVWF01000169.1 Pseudomonas denitrificans (nom. rej.) strain 1269_PDEN 878_48188_839021_132_,694+, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11562 28 100.0 32 ............................ GACAAGAAACTGTTGGCCGAGCATCGGCACCG 11502 28 100.0 32 ............................ TGCAGCGCCGCGAACGGCAACGGCGGCGACGG 11442 28 100.0 32 ............................ TGGAACGCATTGCCTGCCTGCGTAAAGAACTC 11382 28 100.0 33 ............................ TGTGCCGTCCGCGATCTGGCGGATTGCCGGCTA 11321 28 100.0 32 ............................ AATCTGAAACGCATTGGCGAAATACACCACCG 11261 28 100.0 32 ............................ ACTGTTCGAGTCGCGAATGACTCGGTGAACTA 11201 28 100.0 32 ............................ AGAACGAAAACTGCTAGCGGCGACGATACCCG 11141 28 100.0 32 ............................ GCCCACCAGCTCAGTCCAGGCGCTGCCGGAAT 11081 28 100.0 32 ............................ ATGCGGATAAGGCCCGCAGGCGCCGAATTGGC 11021 28 100.0 32 ............................ CAGCAGCGGCTCCAGGAAGAGGGGCGCTGCCT 10961 28 100.0 32 ............................ AAGAGTCGCGGCGACAACTACCAGACGTCCGC 10901 28 100.0 32 ............................ GTATGGCTCTCTCCATTGGGGTGGCGATACTC 10841 28 96.4 32 .......A.................... GATCTGGGGCGGCATCATCACAGCAGAATCTA 10781 28 100.0 32 ............................ ACAACATCAATCGCCTGATGCTGGGGCACCTG 10721 28 100.0 32 ............................ AGCTTCGGCACCCTGATGCGCGCCGTCGAGGG 10661 28 100.0 32 ............................ AATGCGGTCCTGCGCATCCGAACTGGTAAGTG 10601 28 100.0 32 ............................ GACCCCCGGAGGACCAACCGTGGACAACGACA 10541 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 10482 27 92.9 32 .....................A..-... TGTCGCGAAGTTCATAAGCGGGCTTAGGGCGA 10423 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 20 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACCTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1286-537 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVWF01000071.1 Pseudomonas denitrificans (nom. rej.) strain 1269_PDEN 424_1389_21909, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1285 28 96.4 32 ..C......................... TAGCTGATCAGCAGGCCGACAGTCAGGCCTGC 1225 28 100.0 32 ............................ TACCCGAATACGACTTGCGCGAGGAAGACGGT 1165 28 100.0 32 ............................ AGCATCGCATCAAATCGTGCAGAACACGATAA 1105 28 100.0 32 ............................ TGGTCGAGCAGTTCGGCAAAGGGGCCGTGGTT 1045 28 100.0 32 ............................ TTCACCTGGTCGCCGGCCAGGCTGATCACTGC 985 28 100.0 33 ............................ TACAAGGTCATGGCGCTCGGCAACGTGGTGGAA 924 28 100.0 32 ............................ GCTGTGCGTCGCCGTGGTCTGACGGTCGAATC 864 28 100.0 32 ............................ AGCAGATACCCGAACCACTGGAGGTACATGCA 804 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 744 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 684 28 100.0 32 ............................ AGACAATCCGGACCTGCCGCCCAGGACGATCT 624 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 564 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 13 28 99.7 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGTCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //