Array 1 294433-294626 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKWB01000012.1 Salmonella enterica subsp. enterica serovar Derby strain 201402501 201402501_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ======================================== ================== 294433 38 100.0 40 ...................................... NATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAG 294511 38 100.0 40 ...................................... GCGTACTTTGCAGTGCTCACACAGATTGTCTGATGAAAAN 294589 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ======================================== ================== 3 38 100.0 40 GGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAA # Left flank : TCACGGCAGAAGCAGAAAACGCGGCGGACTGGGTGTTAAACAGCCTTGCCGACCTGCCATCGGCGATAAAAAAGCAGCAAAAATAAGCGTTATGGATAAAAGATGAGCGGTTAAAACAAAAATGCATTTTTCCGCTTGTCTTCCTGAACCGACTCCCTATAATGCGCCTCCATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTCGGTTGAAGAGAAAAATCCTGAAATTCAGGGTTGACTCTGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACGGTGAGCTGCAAGCCGCGTCGCATCTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCCTCGGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCATGAGCATCAAACTTTCTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAG # Right flank : AGCGTACTTTGCAGTGCTCACACAGATTGTCTGATGAAAAACGAGCAGTAAAACCTCTACAGGCTTGTAGCTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACAGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGGCGTGCTAATCTGCGATAAGCGCCGGTAAGGTGATATGAACCGTTATAACCGGCGATACCCGAATGGGGAAACCCAGTGTGATTCGTCACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGAGCCCAGAGCCTGAATCAGCATGTGTGTTAGTGGAAGCGTCT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.00,-5.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 2844237-2842255 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKWB01000012.1 Salmonella enterica subsp. enterica serovar Derby strain 201402501 201402501_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2844236 29 100.0 32 ............................. TTGAGGTTTGCGTTGAGCCTGTTCAGCATCAC 2844175 29 96.6 32 ............................C GCTGACTCTGCGGCGGATCTTCTCAACCAGTC 2844114 29 100.0 32 ............................. CCTAGAAAAGTTTGTTTAGGCAATCAAGCCCC 2844053 29 100.0 32 ............................. GTGTTAATTAATGAGTTTATTCCGTTTTAACA 2843992 29 100.0 32 ............................. AAATTTGGTTGACAGTAAAAGAGTGTGTCGGT 2843931 29 100.0 32 ............................. TCGGCTCGAGCACTTGCGACAACAAACACACG 2843870 29 100.0 32 ............................. GCGTTGAACTTGATATTCTCTACACCGATGCA 2843809 29 96.6 32 ..C.......................... ATATGAGGCAGCTCGCTGGCGGCTGGGATGGT 2843748 29 100.0 32 ............................. CCGTTTTTTTCCCACAGTTTGCCACCGAGACG 2843687 29 100.0 32 ............................. TTAAGTCGCTCTTTGTACGCTACACCGGAGGC 2843626 29 100.0 32 ............................. AAATATCCAGAGCTGGGCTTGAGGCTGACGGT 2843565 29 100.0 32 ............................. TAATTGACATACATTCACCATATTAAGGAAGA 2843504 29 100.0 32 ............................. CCATGCGCGGCGGCGCTTGCCCAGCTCAGAAA 2843443 29 100.0 32 ............................. GTAGTCTTCATATGCAGCGACATCATTGCCGA 2843382 29 100.0 32 ............................. GTCATTTTCTTGTTAATGGCGCTTGCATTAAC 2843321 29 100.0 32 ............................. CTGTGTGGTCTGTGCATAACGGTGTAACAGAG 2843260 29 100.0 32 ............................. AAAAATAGTCCTGAACGATAGCCCGCGCGGTC 2843199 29 100.0 32 ............................. CAGGAGTGGCTGGAGACTGTCGTCAAGCCTGA 2843138 29 100.0 32 ............................. GACCTATCAGCCTAATTTCCGGGGCAAGAGCT 2843077 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 2843016 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 2842955 29 100.0 32 ............................. GCGTTTATTTTTGATTTGTTATTTGGACGTTA 2842894 29 100.0 32 ............................. TTCCGGTCCTGCCCACTATTCGACAAAATCAG 2842833 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 2842772 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 2842711 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 2842650 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 2842589 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 2842528 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 2842467 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 2842406 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 2842345 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 2842284 29 96.6 0 A............................ | A [2842257] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGAAGCTGACCGGAAAATTGATCCCGCTGATCGAAGAGGTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATNGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2860677-2858999 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKWB01000012.1 Salmonella enterica subsp. enterica serovar Derby strain 201402501 201402501_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2860676 29 100.0 32 ............................. AGCGCCGATCCGGTGGTGTCCAACACAACGAA 2860615 29 100.0 32 ............................. GCTTCTGATTGCATTAGCTCCAAATCAGTACC 2860554 29 100.0 32 ............................. GCGTCAGGCGTGGTGGCCGTGATTACGGACGA 2860493 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 2860432 29 100.0 32 ............................. GGCTAACCCATGAACACTATTACCAAATTCAC 2860371 29 100.0 32 ............................. GTTGCCGCCCTTACTGCGCGAGGCGTTGGAAC 2860310 29 100.0 32 ............................. GAGGGGCCGTCTGCCGCATATCAAACGCTATC 2860249 29 100.0 32 ............................. CAACACGAAAGAAAAAATACTCAATATTATTG 2860188 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 2860127 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 2860066 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 2860005 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 2859944 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 2859882 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 2859821 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 2859760 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 2859699 29 100.0 32 ............................. CTTGCAGCCGAATACGGTATAGAGTGGGACGG 2859638 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 2859576 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 2859515 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 2859454 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 2859392 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 2859331 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 2859270 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 2859209 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 2859148 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 2859087 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 2859026 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGAAATCGACTCCTGAAGTAATTCCGGGTGCCAGGTCATCTTCGCACCAATCACCTCACATATTTGTAAAAATAATTGTCTCTCCTCTCTACTCATAGATTCTATCACTGTATCATCTGAGATATTAAGGATGTCCTTAATACTGCTTTGGCTAATCACCGTGTCGCCGACCATAAGTAAAAATTGTGTCTGAGAAGCGTCCATCTTGATAGTAAACAGATCCTGATGAGCCGGGCAGGCCAGATGTTGTAGCCGTTTAAAGGCGTAAATTTTATTTATATCCTCTACGTTAACTTCCATCTCTCCAGGTTCACCACGGCCCTGTCCGTGAATGATGGAGTGTAATACTTCCAGCGCATGGTCCTTTTTTTCCGCTCTAAAATGATCCTGGACTTTCTCCCAGCCCCCCATATGGATTGCTTTTTCTTTATCTGCGCTTAACAGATGAGCAAGCCGACTTTCATTAAGCGTATAATTTTGATGATTACCGACCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //