Array 1 41051-43599 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPFP010000002.1 Lacticaseibacillus rhamnosus strain 1001270B_150601_F12 NODE_2_length_207949_cov_28.9685, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 41051 36 100.0 30 .................................... TGCGACTAACACCTGCGATCAAAGCGAAAC 41117 36 100.0 30 .................................... TGCCAGTTGCTGGAGGAGATCACAACGACT 41183 36 100.0 31 .................................... TGAAGACAAGGTTGCGCCCTGTACACTGTTA 41250 36 100.0 30 .................................... GCATTCAGCGTTGGGACAATCCTTCCAGAA 41316 36 100.0 30 .................................... TAATTCGCAGCTAAAACGTGTCACCGAGCA 41382 36 100.0 30 .................................... TAATGTGCCGGTGGGAGCAATGGTGTTATC 41448 36 100.0 30 .................................... AGTAAGGTAGCCAAATACAACCATAAGGGT 41514 36 100.0 30 .................................... AACTATCTAACACGCTATACACAGAATGGC 41580 36 100.0 30 .................................... TTTAATATGCAGGCGGCGACTGATTTATTT 41646 36 100.0 30 .................................... TGATTTGCGAGATGTCGCGATAAGAAGTCA 41712 36 100.0 30 .................................... GACAACAGACTCCGTCAACATCAGTCTTAA 41778 36 100.0 30 .................................... ATAAACATCGTATGCGAATCGTAACAACGT 41844 36 100.0 30 .................................... AGTTGATTGAGGCGCGGATGTACATTCCTG 41910 36 100.0 30 .................................... CGGCACGCTATTCCATCCGATTAGCTACTT 41976 36 100.0 30 .................................... CCGTTTTGGTTGCAAAACGAACCGATTACG 42042 36 100.0 30 .................................... AAGGTGTACTGCTTAGCTGACTCCCACGTG 42108 36 100.0 30 .................................... GAAAGTTCTTTAAGTTGACCACTCATTTCA 42174 36 100.0 32 .................................... TCAGGGTGCCGGCTACATATACACGACTTTCG 42242 36 100.0 30 .................................... TCTGGAAGCCCGCAATAGTCAATTGAAGCT 42308 36 100.0 30 .................................... AAATGGTTTGAATACCCTTATCCCGCCATT 42374 36 100.0 30 .................................... TAATGACGCTTAACGCTCTCCGGTTGGTCT 42440 36 100.0 30 .................................... AGTCGTGCAAATCCACGTGCGCGCGTTGCA 42506 36 100.0 30 .................................... TTTTATGATGGGCTTGTATTTTCCCAAATA 42572 36 100.0 30 .................................... GGCAATTTTAAAGCCGTGACCGATGCCACG 42638 36 100.0 30 .................................... AATAGCAACCGAAAGCGCTCCAGTGTCGCC 42704 36 100.0 30 .................................... GTAGTGCATACCATCATCACGAGTGCCGTT 42770 36 100.0 30 .................................... TGAACACGATGACGTAAAAGAAATGTATGT 42836 36 100.0 30 .................................... GAATGTTTTACCATCGGAACGCGTGGTAAT 42902 36 100.0 30 .................................... AATAGCCAAGTAAATACCGGCACGATTTAC 42968 36 100.0 30 .................................... CAACATCAACAACAGCCGGCAATTGCTGCC 43034 36 100.0 30 .................................... ATGACGCAGTTGGCGAAACCTTTGCACGTT 43100 36 100.0 30 .................................... TCGCTGACATTGACCATCAACGGCGCCGAG 43166 36 100.0 30 .................................... GCGTGTTAGTCGCTTGTGTGGCTTACCGTT 43232 36 100.0 30 .................................... GCGGCATCTTCAAAATCAAAACGACGCGCA 43298 36 100.0 30 .................................... CAATATTTTGCCCCTTGTTCCGTTGCGCCA 43364 36 100.0 30 .................................... GTTGACGCGTTGCGCTGTCGCTGGCCGTTG 43430 36 100.0 30 .................................... TGATGACGAAGTGAGTTTGCCCACCGCTTG 43496 36 100.0 30 .................................... ACTCGGGTATTGACAAAGATCGACGCGGCA 43562 36 86.1 0 .......................AA.C....T...G | C,G [43588,43594] ========== ====== ====== ====== ==================================== ================================ ================== 39 36 99.6 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Left flank : GAGCTGGATTTGGACAAGTTATTTCAACGCTTGATCATCAAAAAGGTAAGCCAATTGATAGAGGATCAGCGGCTGATTGAGTTGATTGAGCAGTCACAACGACTGGCAATGAGCTTATTGAGAGAGCCGTTGTTAAGTGAACTTCCAGTCACAGTCGAACCTGGTGGAAAACTTGAACAAATCATGAAATACTGTAATGTTCATTTTGATGAGGAAGTACTCACGGAGCCTTTCTCGAAAGTTGAAGCGGCAATTCAGACTTTGGCGAAACTTGAGGAGAAACGTCTTGTCATTTTTGCCAACATCAGTCATTATTTAGATGTTGAAAGTCTGAGCAAGCTGTTAGATCAGGTTAAGAACACATCGTTGGAATTACTTCTCATTGAATTTTCAGATGTCGAACGCAGAAAGTTTTTTGAGAAGTGCCAGTATATCTATATTGACAGAGATTTTATGGATAGCCGAGAACTGATTGATTAAGAGGCTGTGTGAAAACACCG # Right flank : GACTCACCTCATAAATGCTATGCAAATCCCAAAAGAAGGCAACAGCAATGTCAAAAGCGAAACTAATCCTTTCGCCAGTATTTTACACTGATCTCAAAGAAATCCGTCACATGTACCAACAGGCGTTCAAATCACTTTACGGCAAATATCAAGATCGGGAAACCAATCCCTACTGTGAATCGTTGAAAAGCTTACAGAAAAAGTTCAAACGGCCTAACAATGCCTTCTTCTTTATAACCGTTGAAGATAAACACATAGGCCTGATTCGCGTTGTAACAGATCTCAAAAATTCGGCAGCCCGTATTTCACCATTTTTAATCTTGCCGTTTTATCAAGGAAAGGGATACGCTCAGCTCGGACTACAGTTGATTGAAGAACAGTTTCCGCTCATTCAAACATGGTATGTAGACACGATTGCGGAAGAACCCAAGTTGGTACATTTGTATCGCAAAGTCGGTTTTCAGCAGCTACCAGATCGGGAAACGACGATTAATGAGCAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //