Array 1 2609069-2610255 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAHGB010000003.1 Klebsiella quasivariicola isolate SB33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2609069 28 100.0 33 ............................ CGGGTGAACTCCCCCCGCAGGTGGAGGTGTTTG 2609130 28 100.0 33 ............................ CTCCCCCCGCAGGTGGAGGTGTTTGGGCAGCTT 2609191 28 100.0 33 ............................ TTTGCTGGTCCGCAGCGCGGTCGCGGTTGGGGG 2609252 28 100.0 33 ............................ CTTTTGATCTTCGCACCATTTTTCAACGGCTTT 2609313 28 100.0 33 ............................ TAACCCCGGTTTGATCCAGTTTTTCAACCAGCC 2609374 28 100.0 33 ............................ CAGACCTCTTCGTCCACCTCGACCGCCCTACAG 2609435 28 100.0 33 ............................ TATCGCCCGGGCTCGCAGGCGCAGGACTATATC 2609496 28 100.0 33 ............................ TACCAGTTACAGAAAGGGGATTGCCTCGAAGTT 2609557 28 100.0 33 ............................ TATATTGGCTATATCCCGATTTATACAGGCATG 2609618 28 100.0 33 ............................ TCTGAGCTGGTGGCCATTAATGCTGGAGCTGTA 2609679 28 100.0 33 ............................ TAGATAACGACCCGGACGACTTCCGGCGGCGGC 2609740 28 100.0 33 ............................ CAGATCCCACCAGATTTCCCGCAGCTCACTAAG 2609801 28 100.0 33 ............................ TGTGGATTCATATGCTTTAGCAGGATATGCGCA 2609862 28 100.0 33 ............................ CATCAGCAGAGAACCCGAGCGTAGACAGGCATT 2609923 28 100.0 33 ............................ TATTGTTCGCGGCAAGTGTCATACGACCTGGTA 2609984 28 100.0 33 ............................ TCATCCTTAACGGGTCGATGATTGAGCCTGTGA 2610045 28 100.0 33 ............................ CCAGCCATCGGCAAAGCATATCGCGCGACCGTG 2610106 28 100.0 33 ............................ CTCGCGCGCCGCTGCGGGCTGATCACGGCCAGC 2610167 28 100.0 33 ............................ CAAAGAGGGGATCTGTTACGAGCTGCGCGACTA 2610228 28 71.4 0 ........T.....T......C.TAGCA | ========== ====== ====== ====== ============================ ================================= ================== 20 28 98.6 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : GAAAATTTGTCAGCATACTTCCGCTATCCAACTGATATCCGTAAGGTCATTTACACCACGAATGCGATTGAATCGGTGCATCGTCAGTTCAGGAAACTGACCAAAACCAAAGGCGCTTTCCCGAATGAAAACAGCCTGTTGAAGCTGCTTTATCTGGGGCTGATGAATGCACAGGAGAAATGGACAATGCCCATCCAGAGCTGGAATTTGACATTGTCGCAGTTAGCCATTTATTTTGAAGGACGGCTGAATAAAGTGATGACGCTGTAGAATTTTTAACATGACACAGAATTCTGAACGCTCTCGTACACGCCTGTGGAATCGGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGAACTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAATTCTCGCTCTTTCACAATATGTTGGT # Right flank : AATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATGATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAGTATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACCGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGGCTTTACCAGTCACATGATTTAATACGCCAGTTAAAACCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGTGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAATTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTACGATGAGGTAGAGCACAGGCTACAAATTGGCTGGCTTGTTGGTCTGGATATCTCCAGGTGTTGGAGCAGTGACAGAAATCCATTTTACATCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3557483-3557152 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAHGB010000003.1 Klebsiella quasivariicola isolate SB33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3557482 28 100.0 33 ............................ TGGGTTTTCGTTCGAGTTTAGCGCCTGCAGGCG 3557421 28 100.0 33 ............................ TCGAATGGGAAAACCTGTTCGCTTTTTTATCAG 3557360 28 100.0 33 ............................ TGGGATTCAGCCTGGGTTCTCTCTTGATGTGAG 3557299 28 96.4 33 ..........T................. TCATGTAACTTTCAGTGCGCACCTTCTTTCATG 3557238 27 92.9 33 .............A.......-...... TCTCGTGATGGTCTATGACGTCGCCGTCGGTGG 3557178 27 82.1 0 ............C.T......C-.A... | ========== ====== ====== ====== ============================ ================================= ================== 6 28 95.2 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : GTCAGCGTCGGCCAACCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGTCTGGACGGCGCAGCGCAGGATAACAGTCTCCAGCTCCCGCTGCTGACCAGCATGTATCTTGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGTGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTGCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCCGGGAATGACAAAAGTGTTTTGCGCCTGGCTGCGGCCCGGGGAGGCGAGTAGGGTAGACCGGTCCTGGTCAGCAGCAAGTCAACGGTGGTGAGATGGGGACTTACTTTTTCGTTTGATGAATGTGATGCTGATGCGGAACCCCTGCGGAGTGCAATTATCGTAAATCTGGTGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : AACAAAGCTGGTCAACCGTTGTTATCGTTATCTTGGTTTAGTTTGGCAAACACAGTTTAATATATTTTTCATGTGAATTTAAAATTCATATTCATGTGTTATATTTATTTTTTATTTCGCAATGGTTGTTAAGTCCATTTTTCTGGCGCACCTGAAGTATGATTATTCATACTACTTATTTATAATGTCTGATATTGTCGATTTGATGTCTCACATTAAGCGCAGCGTTTGTGAGTGCTTTTTATTTTATAAAAAATTATTTATAAAGCTTCCTGACTTTAGTATTAATAAAACGCACATGTTTTATTAAGGATGATTTTCATGAGGCGCTTAACCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGCCCGGCGAAAACCCGGATGTTGAGTGATGGTCGCGTGGTGCAGGGACGCTCGGTATTGAGTCATTGTCAGATTGTCGGGGAGATTGCCCGGGCGCTTATAGCGCTGTATCC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-11.60,-11.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 4750890-4748115 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAHGB010000003.1 Klebsiella quasivariicola isolate SB33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4750889 29 100.0 32 ............................. CCCCCAGGGTGTCGCATCGTTTGCACTTGTAG 4750828 29 100.0 32 ............................. TATCTGGCGACCTGCCGCACCGAAGAGGGGCG 4750767 29 100.0 32 ............................. GTGGTGCATCCAGAACGGTAGCCAATTCTGTG 4750706 29 100.0 32 ............................. GATGTTGGTCACGGTGTTAGCCCTCTTTACGT 4750645 29 100.0 32 ............................. TGGGAAACGTTTCAGGAATCGTTGTAAACCAC 4750584 29 100.0 32 ............................. ATGTACGTTACTATCAGGATGACGTTTAAAAT 4750523 29 100.0 32 ............................. CATTATGAATCGCTCAATACTTTCTTCACTAT 4750462 29 100.0 32 ............................. AATTATTTTAAACTTCTTGCGTAATTCGTACA 4750401 29 100.0 32 ............................. TTCTATGTGTTGAATTGCTTGTTTACCTGTTT 4750340 29 100.0 32 ............................. AGCCGGGAATAATTCATTACTGATCGCCAGGT 4750279 29 100.0 32 ............................. CCATTTTTCGTATGATTTAGTTCTCAATGTTT 4750218 29 100.0 32 ............................. TCAGAATTGATTAAAACAGATGGTGTTAAAGT 4750157 29 100.0 32 ............................. TTGTCAACTTCACGCCAGTAGTCTTTAGAGAT 4750096 29 100.0 32 ............................. CAAATATTGCTGTGCATCGCGGGAGACAAAAC 4750035 29 100.0 32 ............................. CAGCATTGCTCAAACAGCAGGCAGAGTATAAA 4749974 29 100.0 32 ............................. GTTGCGGTCTGCTGGCGTCGATACCGGGTGAG 4749913 29 100.0 32 ............................. AGTTTTTCAGTTTCATTCGCTGTGGTTTCGAC 4749852 29 100.0 32 ............................. TAATCGAAATCGGTGTTTTTTGGTATGACCAT 4749791 29 100.0 32 ............................. GCCGAGATGTCAGCCGACTCATGGCCTTATAT 4749730 29 100.0 32 ............................. CGCACTCAGCAGATAGTTGGTGAGATTAATGG 4749669 29 100.0 32 ............................. GATAATGACTGACAATATCTTACCCGCTACCG 4749608 29 100.0 32 ............................. CGTACCGCGCATGACCTGCGCCGCGTGGCAAA 4749547 29 100.0 32 ............................. AGCAGCACGAAATACGCATGCGAGCTATGCGT 4749486 29 100.0 32 ............................. CCAGTCCTCGCCAGTCTGCGCCGTTTTCAGGG 4749425 29 100.0 32 ............................. GCACGCCGTAACGCGCGCTGTGGGTAATGTGA 4749364 29 100.0 32 ............................. TCGTGTTATATCGCCCTACCAGTAGCACAAGT 4749303 29 100.0 32 ............................. AGGTATTTGATGATTTGTAATCTGCTGCATAT 4749242 29 100.0 32 ............................. CGGTTATTCTCCACGTTAGTGAACTGGAGCCA 4749181 29 100.0 32 ............................. TTAATGCTTCCGGGGAGGTGGTAGCCAACGTC 4749120 29 100.0 32 ............................. CACGGTATATGCGATCGCGATATTTAATCGCG 4749059 29 100.0 32 ............................. ATCATCAATTTCGGCCAGAATGGTATCGACGA 4748998 29 100.0 32 ............................. CATCACGGGTGAAATGTGCTTACCGATACCAA 4748937 29 96.6 32 ........T.................... GATGTTTCTGTCGGGGTCGATCCGGTTAAGGC 4748876 29 100.0 33 ............................. GATTTCACTCTGAGCGCCATTCCCCTGGAATGC 4748814 29 100.0 32 ............................. CGCAGTAACGAAGTCGCGGGTGTGAAGGTACT 4748753 29 100.0 32 ............................. TCCGAAGACCTTCAGAGCGCCGGACAGGAGTT 4748692 29 100.0 32 ............................. TCTTTTTTCAGGCACATATCCGGTAAATTAGC 4748631 29 100.0 32 ............................. CCAGTTTATTGCTATCTCCAGCCATTAAAAAT 4748570 29 100.0 32 ............................. TGGGGGTAACTGGTGTCAGGCTGGGGGCGCGG 4748509 29 100.0 32 ............................. TATATATGGGCATGAAATAGTTGCAGGAAATA 4748448 29 100.0 32 ............................. GTCAGGCGTGAGTAAAGGATTTTCCTCGCCTC 4748387 29 96.6 32 ................T............ TGGAAAGACATTAAGAGAGGGGGAATTAAAGA 4748326 29 100.0 32 ............................. CGCCTGGGGGGATCGCGGTGAGTGATTCATTT 4748265 29 100.0 32 ............................. GAGGGCGCGGAGGGTAACGTCTACGTGCTGCG 4748204 29 100.0 32 ............................. GCGGTTGCCCTGATGGTATGGCGGCTGTGTAG 4748143 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 46 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGTTGTCGGCAGGCGAAATCGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATCCCTGAGCCTGAATCAATGGGGGATAGCGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTCCCTCCTCGTCTGCGGGGGCGGCTCGCCATCTGGCTGCTGGAGGTTCGAGCGGGAGTCTACGTTGGCGATACCTCAAAGCGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGTGAATCAGGTTTCGAGTTCCAAACTTGGGGTGAGAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTTCTTCCCATTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAAATTGTTGGAATAAAGTTGGTGGATTGTTGTCGCCTCAAAAAGGCATTAAAAAACAGTAATATATGTTTAGT # Right flank : GGGTTCACTTGGGTGAAACTGAACCAACTGTGCCCGCATTCGCTGGGATAAGCCCGTCACTAATGTTATCGATCCTGAGGGTGGGTACGAAAGCTTGCGGAAAATAAGTGTTGCTACCTGCCGCTCTTTAGCAGAATGCCCCCTTAATTAGCCGATATCACTGCTTTTTCACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGTATGGGGCGCCGTATTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGTCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATCATCTTCAGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //