Array 1 77474-77306 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV810267.1 Neisseria sp. HMSC069H12 Scaffold139, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 77473 36 86.1 30 NNNNN............................... GACATACTCATCGTCTTCAGCAAAATTAAT 77407 36 100.0 30 .................................... GCTAAACTTTCGGGGTGTTCCCCGAACCCC 77341 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 95.4 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TTCTCATTTCGCAGTGCTACAATTTGGGTTGAATTTTCCTTTCAAATAAAGGCGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCTCCCTTTCTCATTTCGCAGTGCTACAATATTGTAGCACCATTTACACGCGCATCTTTGGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATCACCTTTGAAGTCGCTGGTTGTCGAGTTGAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTTTCCCAATGTTCAGTATGTTGTTTTGTATGTTGTAGCTCCCTTTCTCATTTCGCAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CATGTATGCAAATATGTACAAGACAAGTATGTTGTAGCTCCCTTTCTCATTTCGCAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCCCTTTCTCATTTCGCAGTGCTACAATACCTTAATGGGAAACCCTTATTCTATAAGGGTTTCCCATTTTATTTGGTCTGAAAAATAGGACTTAAAATAATAATAGTTGGTCGGAATTTACCCTTTTTTCTTGGGTTTTCAGCTCTCCCAACAGCAGTTTCATGGTGGTATATTGCTTTTCTGTTACTTCCAAACAGCGGATTGACCCTTCTTGCGGTAGGTTTGCACATAGCCTATTGTGGTGTTTTTGCAACGAATCTCGACCTTTGACAATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCATCTTTTAATAGAAACTGGCGGAATTGATT # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA // Array 2 78054-77885 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV810267.1 Neisseria sp. HMSC069H12 Scaffold139, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 78053 36 83.3 30 T.C.G.AGC........................... AAACAGCATTTACTTGAGTTACAATCTGCG T [78047] 77986 36 100.0 30 .................................... TTGGGTTGAATTTTCCTTTCAAATAAAGGC 77920 36 86.1 0 ...............................NNNNN | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 89.8 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TGACATTAGGTTCCAAATTAGAAGCTTGGCCGCCTGTAGGCTTAGAAAAGCCGTAAGTTTGAAGATTAAAGGATAATGACATGCGTCATCGTAATGGCAACCGCAAATTAAACCGTACTAGCAGCCACCGTGCTGCGATGCTGCGCAATATGGCGAATTCCTTGTTGACTCACGAAACCATCGTGACAACTTTGCCTAAAGCAAAAGAATTGCGCCGCGTAGTTGAGCCCTTGATTACCTTGGGTAAAAAACCTTCTTTGGCAAACCGTCGTTTGGCTTTTGACCGCACTCGCGATCGTGATGTTGTAGTTAAATTGTTTGACGAATTGGGTCCACGCTTTGCTGCTCGTAACGGCGGCTATGTTCGTGTACTGAAATACGGTTTCCGTAAAGGCGACAATGCTCCTTTGGCATTGGTTGAATTGGTTGATAAAGCAGCTGATTCTGCTGAATAAGCAAATTAATATGAAAGCACTACCTGTTTAGGTAGTGCTTTTTTA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCTCCCTTTCTCATTTCGCAGTGCTACAATATTGTAGCACCATTTACACGCGCATCTTTGGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATCACCTTTGAAGTCGCTGGTTGTCGAGTTGAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTTTCCCAATGTTCAGTATGTTGTTTTGTATGTTGTAGCTCCCTTTCTCATTTCGCAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCTCCCTTTCTCATTTCGCAGTGCTACAATGACATACTCATCGTCTTCAGCAAAATTAATGTTGTAGCTCCCTTTCTCATTTC # Questionable array : NO Score: 4.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [5-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : NA // Array 1 14667-14436 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV810302.1 Neisseria sp. HMSC069H12 Scaffold648, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 14666 33 100.0 33 ................................. CTCTTTTGGGCATCCTATTAAAAATGCTCATTG 14600 33 97.0 33 T................................ CCAAAATTCGGGCTGGCCGACGCAAGACAATGG 14534 33 97.0 33 .......G......................... GACTCTCGAAGCTGCGCCTTGACTGCATCCCAG 14468 33 93.9 0 .......G..............C.......... | ========== ====== ====== ====== ================================= ================================= ================== 4 33 97.0 33 CCCAGCCACCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : GTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTACAAAAAATCCACTACTGCCCTAGAAATGAACGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTATTGAATTGGATTTGATAGATGAGTATGGAATGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACGGCTTATCTAGGATTAGACCCTAGAAAATATCACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACAAACTCAAAATCTTGGTTATCCGATTTTTCCGTA # Right flank : CTCTTGCTCTTCGGCCCGCTCGCCTGCCGCTTTGCCAGCCGCCTTCGGGCGGCTGTGTGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTAATACAACCAATAGTATTGAATACGATGGTCGATCAGCCGCCTTCAGGCGGCTATGTGTTGAAACGCCTTCTGGAATAGGCAGGTTAGGAATAATTTTCCAGCCGCCTTCAGGCGGCTGTGTGCTGAAACTCTAGTAACTACGAACTCTATGACGACCTATTCCGTCAGCCGCCTTTGGGTGGCTGTATGTTCAAATATCGTCCAAGCAGGCTACTCTTCTTGGTGCGCAGGAAATTGCCTGCCAGACGGGAAAGTTGCATGATTTAGGGAAATATTCAGAAGCCTTTAACCGTCAATTACACGGCG # Questionable array : NO Score: 5.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCACCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-3.30,-3.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 15063-14829 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV810302.1 Neisseria sp. HMSC069H12 Scaffold648, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 15062 33 90.9 34 NNN.............................. TTACAAAAAATCCACTACTGCCCTAGAAATGAAC 14995 33 100.0 34 ................................. TATTGAATTGGATTTGATAGATGAGTATGGAATG 14928 33 100.0 34 ................................. ACGGCTTATCTAGGATTAGACCCTAGAAAATATC 14861 33 93.9 0 A...............................N | ========== ====== ====== ====== ================================= ================================== ================== 4 33 96.2 34 GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTCTGTAGTTTGTACTTATAAGCACAAACCAAAAGACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCACCAAGACTATCCCGATTACAAGGCAAACAGAAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTTGAAAAATGATACTTGAGGGAATGCATATTGATCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAATCCCCAAAGAACCATTCCGTACTCGTCCATCCCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACAAACTCAAAATCTTGGTTATCCGATTTTTCCGTACCCAGCCACCTTCAGGCGGCTGTGTGTTGAAACCTCTTTTGGGCATCCTATTAAAAATGCTCATTGTCCAGCCACCTTCAGGCGGCTGTGTGTTGAAACCCAAAATTCGGGCTGGCCGACGCAAGACAATGGCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACGACTCTCGAAGCTGCGCCTTGACTGCATCCCAGCCCAGCCGCCTTCAGGCGGCTGCGTGTTGAAACCTCTTGCTCTTCGGCCCGCTCGCCTGCCGCTTTGCCAGCCGCCTTCGGGCGGCTGTGTGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.70,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 15458-15223 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV810302.1 Neisseria sp. HMSC069H12 Scaffold648, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 15457 33 90.9 35 NNN.............................. TTCTGTAGTTTGTACTTATAAGCACAAACCAAAAG 15389 33 100.0 34 ................................. CACCAAGACTATCCCGATTACAAGGCAAACAGAA 15322 33 100.0 34 ................................. TTTGAAAAATGATACTTGAGGGAATGCATATTGA 15255 33 97.0 0 T................................ | ========== ====== ====== ====== ================================= =================================== ================== 4 33 97.0 35 ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATTAATTAGTGGAAATGTTTATATTGACAAATACTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAAGCCTGCGTTAACAGCTTCTTCAAAATCAAAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATTACCTTAAAGATTGAATATCATCATAGCCATTACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATAGGCCAAATATGCAGCTGTACCCCAACCTGAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTATAAGTGATAGCGCGTCAATGCCAATTTGTTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CAATCCCCAAAGAACCATTCCGTACTCGTCCATCCCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTACAAAAAATCCACTACTGCCCTAGAAATGAACGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTATTGAATTGGATTTGATAGATGAGTATGGAATGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACGGCTTATCTAGGATTAGACCCTAGAAAATATCACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCT # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.90,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 4 15918-15618 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV810302.1 Neisseria sp. HMSC069H12 Scaffold648, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 15917 33 90.9 34 NNN.............................. ATTAATTAGTGGAAATGTTTATATTGACAAATAC 15850 33 97.0 33 T................................ CAAGCCTGCGTTAACAGCTTCTTCAAAATCAAA 15784 33 97.0 35 G................................ AATTACCTTAAAGATTGAATATCATCATAGCCATT 15716 33 100.0 33 ................................. ATAGGCCAAATATGCAGCTGTACCCCAACCTGA 15650 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 5 33 97.0 34 ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : CAACCCCGAAACCGACAGCCTGCGCTTTTACCATCTGGGTAGCAAGTGGCGACGCAAAGTGGAACACCACGGCGCGAAACCAGCGGTGGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCTAACCTGCGGTTCTCATAAAAATACGGCGGGGTTGGCGAATTGGAATTGTTCTTTAACAATCAGGATATTGCGAATGTGGGTGTAACAGAAAAGGCTGTGTTATACTCGCGTTCGCACTTTTCTTAGGAGCTTAGCGAAATCGGGGCTGCGAAACCTGATGGAGTAAGGCTTTTGAGAGAGGCTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGGATTTGATGCAGGCAGACGGCCACGGCATGGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TATAAGTGATAGCGCGTCAATGCCAATTTGTTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTCTGTAGTTTGTACTTATAAGCACAAACCAAAAGACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCACCAAGACTATCCCGATTACAAGGCAAACAGAAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTTGAAAAATGATACTTGAGGGAATGCATATTGATCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAATCCCCAAAGAACCATTCCGTACTCGTCCATCCCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], //