Array 1 15858-14238 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNSQ010000006.1 Lactobacillus delbrueckii subsp. bulgaricus strain CIRM BIA 906 CIRM_BIA906-i1-1_scf6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 15857 36 100.0 30 .................................... GCAACAACCAGACGGGTCTTTCGTACCTAC 15791 36 100.0 30 .................................... GCCGCGCCCACAATGTCAACGATCGCGTCA 15725 36 100.0 30 .................................... GTTCCCGTGGCCGTCCAGGCTCGCTCCTGG 15659 36 100.0 30 .................................... GGGACTTCCAGGGCGACGATGGCGAGCAGC 15593 36 100.0 30 .................................... CAGAGCGTTACCGCGTTGCTCAGCATATCG 15527 36 100.0 30 .................................... CAGCTGAAGCTTATAAAGAAGCAACGGCAA 15461 36 100.0 30 .................................... CAGCTGAAGCTTATAAAGAAGCAACGGCAA 15395 36 100.0 30 .................................... ACCAGCAAGACCAGGAAGCAAGACCAGGAA 15329 36 100.0 30 .................................... TCACCAGGCGGCCGGCTACCTACCTTATAA 15263 36 100.0 30 .................................... CGACAAATAAGTCTCGTAAAAAGAAAACGA 15197 36 100.0 30 .................................... CCATCCAGTCTGGATCCTTGACCAAGACGT 15131 36 100.0 30 .................................... CAGCAAATTGCCGGCTTATGCCTTTCTTCT 15065 36 100.0 30 .................................... CGGCGTGGTAGTCGGTCAAGTAGCAGGTAA 14999 36 100.0 30 .................................... AGCAAGGCGGCAATGACAAGCTGCTGAACA 14933 36 100.0 30 .................................... TCCTTTTTAGCATTTTGCCGCGCAGTCCGT 14867 36 100.0 30 .................................... AAAGAAAGGGTCGGACTGGAAGCGGTCAGT 14801 36 100.0 30 .................................... TTGATTTCCAAATTGATTCAAAGAAATCTG 14735 36 100.0 30 .................................... TGTAACAAGATTAGAAAAATACTTGAGCCA 14669 36 100.0 30 .................................... AGATTCCCCTGCAGGAAATAAGATTCCCCT 14603 36 100.0 30 .................................... TAAGTGATCCATTGTTTAAGCAGCAGCTGC 14537 36 100.0 30 .................................... TGGTCATGGCTCTAGTAACGTTATACATGG 14471 36 100.0 30 .................................... ACAGACAATAGCAGATAACCAGGCAACAGA 14405 36 100.0 30 .................................... ACTCTGCTTTCGCTGTAACTAGCTTTTTCG 14339 36 100.0 30 .................................... GCTAACGGAATCAATCCAACTGGTTATCGG 14273 36 97.2 0 ...................................G | ========== ====== ====== ====== ==================================== ============================== ================== 25 36 99.9 30 GTTTTAGAAGGTTGTCTATTCAATAAGGTTTAACCC # Left flank : CAGTGAATCTTTACTTCAAAAGTACATGACCAAATTAACTAGTTATGTAGTTGATGAGCTAAGCGCAGATGGCAGAAACAGAATCATTACCTTCTATCGCGATTTACTAAATGCTGTTCAAGACGAGTTGCTTATGGAAGATTTGCCGCTTGAAATAAGTTTTGACACAGACTTGAAGAAACTCTTCAAATTTGGTGGTCTACACTTCAACAAGACACTCACTCGCGATCCATATGGTATAATCGAGACAGTACTTAGGATACATGACAGGTTAGATCTTAAGTCTACTGTTGTTTTTAGTAATGTAGCTCATTACTTAGATGTAGAACAGTTTAACGAAATATCTAAGCTGTGCTTAGAGCTAAAAAAGTCTATTATTTTTATCGAGTTTTGTAGCCATAAGGATCAGGTTGTATATGGTGATGCAAAATTCAGTTATATCGATGAGGACCTTGTTGATTGGTACTAGCCTTATATTAAAGCTGTGTTAAAAAATAACG # Right flank : CTGCTTGGATGCGTGGATTGAAATAGTTTTATAGGGGTGCTTATTCAATGTTGTCAATTTTCCCGACGTATGTTGGGGTGGCCATCATAATGGCCTAATACTAAGACGACAATTCTGCTCATTCCACGCGGGTGGGGGTGATCATTTTATAAGATTGTCTATTCCATAGGGGACAAAAGTGCTTTTCGTGATTGAGAAGCACTTTTTCCTTTTGAACACAACAACTTAAAAAAACGTTAAATCAAACGCTTCACCAAGCAAGCAGGAAAAGATTATAGTAAAATACACTGGTTATAAAAAAGCTGAGCCAAGCTCAGCATCCCCAAAACAAAACTTAGTTAAGGAGAATAAACACATGCAAGATATTTATATTGTTGCGGCCAAGCGAACTCCATTTGGCCGTTACCACAAGCAATTGGCTGACTTTTCTGCTATCGACCTGGGCCAAATTGCCCTGCGCGGCGCATTAAAAGAAGCCGGCCTTGACGCCGAAGCCCTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGTTGTCTATTCAATAAGGTTTAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAAGGTTGTCTATTCAATAAGGTTTAACCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //