Array 1 36730-38480 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAIS01000007.1 Prevotella disiens JCM 6334 = ATCC 29426 strain JCM 6334, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 36730 36 100.0 30 .................................... TTTTTACTTCTCCGCTTCTTCTTCCGTAAT 36796 36 100.0 29 .................................... TTAAATAAATTTATTATGACTTACGACAA 36861 36 100.0 30 .................................... CGACTCGGCTAAATCGCCTGCTTTGTCAGC 36927 36 100.0 30 .................................... GTCGTAGCGTTTCTCCTTTAATTCAAGCTC 36993 36 100.0 30 .................................... GCCCGTGAAGATTGTCTTATACATTACGAT 37059 36 100.0 30 .................................... TTGCATGGTTCATGGACATACACACAATAA 37125 36 100.0 30 .................................... ACCACCCATAAAAGCAGGGCAGTTGATAAT 37191 36 100.0 31 .................................... TAATTCTCCTGGTTTTAAATATCCGTCAGGT 37258 36 100.0 30 .................................... AACACATCAATATTACCGTCTATTGATGTA 37324 36 100.0 30 .................................... CGGAACAGTATATAAAGGTGGCAAAGATAT 37390 36 100.0 30 .................................... AAATTTCAATATATGAGCAATAAAGAAAAT 37456 36 100.0 30 .................................... AGTTCAACGATGCCAGCCTATTTGTTACTT 37522 36 100.0 30 .................................... TCGTTCTTCTTACATTGTCAGAACGTTGTT 37588 36 100.0 30 .................................... CTTACAGATGCGCTGTGGTGTATAACCAAG 37654 36 100.0 30 .................................... CATTCCGTATGCTAATGTGAGGGCTGCTCC 37720 36 100.0 31 .................................... CCCTTTTGGCGATATTTTATCAGAGGGGGAA 37787 36 100.0 30 .................................... CGTTACCTTTTTTATCCACTGCCGCTTGTA 37853 36 100.0 30 .................................... TAAAATAGGTATGATAACAATATTAGGGAC 37919 36 100.0 30 .................................... CTATAATCCACAACACGGTAAAGTTCAATA 37985 36 100.0 29 .................................... CTCGATATTGAGCCAATTATTTTCTGTTA 38050 36 100.0 30 .................................... ATGAAGTGGCGCAACAAGGTAATGAAGTAC 38116 36 100.0 30 .................................... CCTTGAACTTGACGGACTCAGCGCAATATC 38182 36 100.0 30 .................................... GGGCGGTAAATAAGCATACAATAATCGCAA 38248 36 100.0 30 .................................... GGAAGATTGAGAGGAAGTATCATATTCACG 38314 36 100.0 29 .................................... TTATTTTTTACAACTTTTTTGGGTGCAGT 38379 36 100.0 30 .................................... GCCACATGTGCACGATATTACGCTTTAAGT 38445 36 97.2 0 ................................C... | ========== ====== ====== ====== ==================================== =============================== ================== 27 36 99.9 30 GTTGTGATTTGATGTAGAATGCGCAAAAGAAATAAC # Left flank : AGAAATATCATTAATATAACGCTTATGCCCAAATACTGATTATTGTTCAAAAATTTGCAAAGATAGAGAAATGAGTGAATTTAGATTAAATGCTTACCATATTATGTGGCTATTTATTATGTTCGATTTGCCCACGATTACAACAAAGGATAAAAAAGAATCTGCTCGATTTAGAAAAGATTTAGAAAAAGATGGCTTTACAATGCATCAGTTTAGTATCTATGTTCGGTATTGTGCATCGTTAGAAATAGCCAAAGTGCATATAAAACGAGTAAAATCACTTGTACCTTTAGCAGGAAAAGTTAGCATACTAATGGTAACTGATAAACAATATTCTAAAATGATAAATATTTGGGGAGGAATAAAGAAAAAATCTCCTTCAACACCTGTACAGTTAGAACTTTTTTAGTAAATTTGCAGTTAAAAGATTATATCAAGTTCACTTCATATAACATAAAAATATTATAACTCGTTGTAAAACAGTTTGCTATGCAATGTAT # Right flank : CGAACAACGTTCAATAGAAGTGTGTTACGGAGTTGGGAAACAAAAGTTCATAGGAATGCTTTCATGACAATATTTTGTAAACTTGTGCTTGTTAGTTGAACTCACTGAACCAACATATTCTTTTAAACGTTAATAAGGTTTAAATACACCTGTTGGCTAAGATAAAATTTGGTAGTTTCAAAAAAAAAGTACTACCTTTGCACTCGCAATTCAGAGATAACACAACATCTTAATTACAATTGCATGGTTAATATCGCGGGTTGGAGCAGTTGGTAGCTCGCCAGGCTCATAACCTGGAGGTCGCATGTTCGAGTCCTGCACCCGCAACAAGTTTCAATAAGTCGCTCATTTTTGAGCGACTTATGTGCGTTTATAAGATAGAATTATTCATGATAATTTTGTCTCAGCGGATTTTTCCAGTTGGCAAAGCGCAGTATTGAACATAAAGTTCATACCTTTGCAGTATGAAATCAGACGCATTATTACGGCTCAGTAGGAAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGATGTAGAATGCGCAAAAGAAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 72292-72014 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAIS01000006.1 Prevotella disiens JCM 6334 = ATCC 29426 strain JCM 6334, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 72291 47 100.0 30 ............................................... CTAAATCACTTAAATTCGTTTGTGATGTCT 72214 47 100.0 30 ............................................... CAGAATGGTCATCGGGGGTAGGTTTAAAAG 72137 47 100.0 30 ............................................... TCCAATCAATGGAGTTAGTACAAAGCGACG 72060 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 4 47 100.0 30 GTTGTGATTTGCTTTAAAATTAGTATCTTTGCATTAGCAAAACCATC # Left flank : GTTAATTA # Right flank : CTAAATCGTATAATACACTGACGAATAGATGTATTACGAAAGATTCAAGGAAAAGAAAAATGCAAGCAAAATAAAGTTTCACTTGTTAAAGGTGGAACTTTATTTTTGCTAAAACAATTCTAATTGCGCTCCTGGTGCATTTGGTTTTTGTGGCTTTTTTCCATAAAATAATTTTATTTCCTCAAACTGTTTGTCGGTTATCCCCATTATTCCAACTTTACCATACGTTGGAATAAAAGTAGATATGCGCTTTGTATGAACTTCCATATTCTCCTTACTGCCACAATGGCGTATATAGATGGAGAACTGAAACATAGTAAATCCATCTTTCAAAAGATTTTGACGAAAAACAGCAGCTGCCTTTCGTTCTTTCTTTGTGTCGGTGGGCAAATCAAAAAATACTATTAACCACATACTTCGGTATTGACTAAATCTATAAGTTTCCACAATTTGTGTTTATAATTCAGGATAAGCAATTTTCTTTTGTTCACCACTAAAGC # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTAAAATTAGTATCTTTGCATTAGCAAAACCATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 1851-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAIS01000004.1 Prevotella disiens JCM 6334 = ATCC 29426 strain JCM 6334, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 1850 47 100.0 29 ............................................... TGCGTTTAGTTTTATTCCAATTTGCTTTG 1774 47 100.0 30 ............................................... GCTTGCCACGTTCGAGTTCTGCGTGTATGT 1697 47 100.0 30 ............................................... CTATATCCGCAACGGCAAAAGGAGGTCTAA 1620 47 100.0 31 ............................................... TTATTCCGGCTATTGGTTTGGCGCGTTTCAA 1542 47 100.0 30 ............................................... TGTCTTGTTGCTCTTTCAACGCTTTTAATT 1465 47 100.0 30 ............................................... TAAAAGTAAATCACAGTGGATATAGAGTGG 1388 47 100.0 30 ............................................... AGAAATTCGCAGCTAACCTTACCGACTGCA 1311 47 100.0 30 ............................................... TAAAGGCATTTATAGGTTTATCGTCAGGGT 1234 47 100.0 30 ............................................... TTAAGCGGGGGTAATAACCACACTCTTTCC 1157 47 100.0 30 ............................................... TGCGAGGATTGTCAGTGTTTTGTCGGAGGC 1080 47 100.0 30 ............................................... CTCATCGCATCGAGTGGAACTCCAGCTTGA 1003 47 100.0 30 ............................................... TAACTTCGGCTGGATACTTCCAGTCCATTT 926 47 100.0 29 ............................................... ATGAATTGTTTTTGTGTCAAGGCTTCCCA 850 47 100.0 30 ............................................... AGAGGTGCTAGTCGCTGTGAAGGTTTCCCG 773 47 100.0 30 ............................................... ATTTTGGGCATATATACCCGACGACCAGCA 696 47 100.0 30 ............................................... ATAAGCAATATCCTTGAAACGCACAAGTAA 619 47 100.0 30 ............................................... AGAAAGGTACAGCTTATGTATAAGGAGCTA 542 47 100.0 30 ............................................... TATTTTTATAAATTATAATGCAAAAAACTC 465 47 100.0 30 ............................................... GGGCGAGCGATGCAAGCGAATAACTTATAT 388 47 100.0 30 ............................................... TGCTGCGTTCTGAAAACCAATGCCAGCTAA 311 47 100.0 30 ............................................... TTTACCATTTCAAGGACTTACAATGATTAA 234 47 100.0 29 ............................................... TGACTTACATTTACGACACTTAACATAAA 158 47 100.0 29 ............................................... CGCATCAAATTCTGTTGTTGCTTCATCAT 82 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 24 47 100.0 30 GTTGTGATTTGCTTTAAAATTAGTATCTTTGCATTAGCAAAACCATC # Left flank : CAGTCAGTTTGCAGCTGAACTGCGTCTGGCTGCCGTCCACCGTGATGCGTCCCATGACGGGAACTGTCCCGTCCTTTTTCACTACCTGACGCTTGAGGTAGTAGATTACTGAAAATGTACTCTTCATTGTCCTTAATTTTTGGGTTTCAAAATTAGTTGGTGAAGAGTCCGGTGTTGGTACGCAAAACGGGGAGGAACGGCGCAATCTTTTTCCGTAACCTGATTTTTCGCATGAGTTATGGATAACTCACTATTCCTTAGAGCCTTGTTTCGCTATTCGTACCCGTTTGTCGCATTTTCGGGCATGGTTACGAACAAGTAACGTAGCGGCGTCAGGATTTGGCTTCGGCAGGGATTGTAATGCTTCACGGATTATCGCCACTTCAACCAAAACCCTTGTAACTCAATTCTATCACTATATCTTTCCGCATTTCACTTTTTTGTAGTAACTTTGCAGACACAAAACCATCCTTACACTCATTATATAACCTGCCTACCCA # Right flank : CTATCTAACCCTTTAATATTTAGTTAGTGTTTACTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTAAAATTAGTATCTTTGCATTAGCAAAACCATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 2 56516-55547 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAIS01000004.1 Prevotella disiens JCM 6334 = ATCC 29426 strain JCM 6334, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 56515 46 78.7 30 T......AA.A..A.C.C..-..C.....................G. CTATATATGTAGATCATCAGACTTTGCAAA AA [56510] 56437 47 100.0 30 ............................................... GGATAGTAAATCTATACTTTCATTTAGCAG 56360 47 100.0 29 ............................................... AGTCCTCGTTTTACCAGTTTTGACAGTCC 56284 47 100.0 29 ............................................... AACAATTCTTGTATAGGTGAGTGCCAATG 56208 47 100.0 30 ............................................... GGAACTCGTCCATATCAAGGGTATCAAGCT 56131 47 100.0 30 ............................................... AGAAGGAAAGTTTTTGTTACAAGCACGTGA 56054 47 100.0 30 ............................................... CCGAACTCATGGAATGAATGTACAACGTTA 55977 47 100.0 30 ............................................... TATTTTATAATACATAACATCGTAATCGGT 55900 47 100.0 30 ............................................... CACGTGCATCTCTTGCTGCGGTGTATTTCT 55823 47 100.0 30 ............................................... TTTTTTACTTTGGAGATGGAAAACACGCGT 55746 47 100.0 30 ............................................... TAACACGCATAACTACAATGTATATCTACT 55669 47 100.0 29 ............................................... GGGGTTGGTGTGGCTTTTAAGTGGTTCTA 55593 47 83.0 0 .....................................G..GTTACGA | ========== ====== ====== ====== =============================================== ============================== ================== 13 47 97.1 30 GTTGTGATTTGCTTTAAAATTAGTATCTTTGCATTAGCAAAACCATC # Left flank : TGCTTTGGAGTGAAAATTTCTTCGATTTTACCTTCCTCATCAATAATGAATGTTGTACGATAAGTACCCATATAAGTACGTCCGCACATTTTCTTTTCACCATAAACACCAAATGTTTCGTTGAGTTTCTTATCAACATCAGCAATCAGCGGAAAAGGCAAATCGTACTTCTCTATAAACTTTTTATGCGATTTTTCATCTTGAACGCTAACGCCAATTACAGCATAACCACGCTTTTGCATGAGTTCATAGTTATCTCTAAAACTGCAAGCCTCTGATGTGCAACCAGGAGTAGAGTCCTTTGGATAAAAATAAAGCACAATTTTCTTACCTTTATAATCACTCAATTTTATTTCATTCCCATCTTGGTCAATTCCCAAAAGTTCTGGTATCTTGTCTCCTATATTCATAATTCTTACCTCATTTATTTATAATATTTGGGTTATCCCACTTACAAAGATACACATATTTTTATAAATCCAAGAATCAAAAGCATTTAT # Right flank : AAAGAGTGTAATTTATTGGAAATGAGCGTAGGTTAATCGCTCTTGATAGTAATAGGTTACGATTTAGTTAGTTATCTACTGCATTATCCTTCTGCGCGTTGCGTAACCTTCAAAGAACTCTTCGTATGCAAAAGTAGCTATTTAATTCGAGATTTTGATATAAACTCCCGTTTTTTTATCCCCTCATTCATAAGAATTTTCCGTAAAAGCGGTTTTATCCGTCGGAACACCATTGCCCAAAACGAGTTTTGAACAAACGTGTGCAGACTGCCGCATAGCCGGAGAAAAGGGCATTGCCTCACGCCTAAACGATGTTTAGACAGATGAAGCAATGCCCCTTTCTTTTGCGCCTATGCCAAGAGGTGCTTTTACGGGTTTTCAAATGATTTTTCTTTTTTCGCTGTCCCTTTTGCCGGAAGCGGAAAGTGAATGCAGAGTGTGTCAGCCTGCCCCATGAATGAAGCAGACGGACACACACAGCCGGGCAAACCGGGAAGAAT # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTAAAATTAGTATCTTTGCATTAGCAAAACCATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA //