Array 1 18398-18010 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAFF01000247.1 Pseudomonas aeruginosa strain HUM-327-D1 repl1 PA2_F12_NODE_28_length_40689_cov_7.33579_ID_55, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 18397 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 18337 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 18277 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 18217 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 18157 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 18097 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 18037 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.5 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1245-136 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAFF01000004.1 Pseudomonas aeruginosa strain HUM-327-D1 repl1 PA2_F12_NODE_407_length_1375_cov_11.8251_ID_813, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1244 28 100.0 32 ............................ AGACCGAGGACGGCTCGAAAACTCGGATGATC 1184 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 1124 28 100.0 32 ............................ TTATTGAAATCCTCAGCGGCCTGCACTTGCTC 1064 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 1004 28 100.0 32 ............................ TGGGTGTCCAACATCGACGGGTCGAACTGCTC 944 28 100.0 32 ............................ TGCGTAGATGCCGCGATCATAGCGCGCCCTAC 884 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 824 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 764 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 703 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 643 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 583 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 523 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 463 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 403 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 343 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 283 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 223 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 163 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 19 28 99.8 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCCGCCTCGCCCGTCCACGACAATG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 10549-11773 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAFF01000405.1 Pseudomonas aeruginosa strain HUM-327-D1 repl1 PA2_F12_NODE_147_length_16306_cov_6.51013_ID_297, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10549 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 10609 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 10669 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 10729 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 10789 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 10849 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 10910 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 10970 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 11030 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 11090 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 11150 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 11210 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 11270 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 11326 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 11386 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 11446 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 11506 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 11566 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 11626 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 11686 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 11746 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 21 28 98.6 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //