Array 1 281054-279742 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXWQ01000013.1 Pseudomonas aeruginosa strain MRSN11285 MRSN11285_contig00013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 281053 29 96.6 32 ...........G................. GACAACGGCGGCCTACAGACTGAAGTCGAGCG 280992 29 96.6 32 ...........G................. GTCACCGTGAGCGTCGACGTGATCGCCAAGGA 280931 29 96.6 32 ...........G................. CCAACGAAGCCGCCAGCGAAGGCAGCCATGTT 280870 29 96.6 32 ...........G................. TTCATCAAGTGGTGCAACCCGAGTCCTGAGCA 280809 29 96.6 33 ...........G................. TCCAGTTCCCCGGAGTAAAAATCCGCTGGGTCC 280747 29 96.6 32 ...........G................. CTCGTTTATCTGGAGCCCCAGGTAAAAATCAA 280686 29 96.6 32 ...........G................. GTTGCAGCATCGCCGGCGTGGCGGGCCTGAGC 280625 29 96.6 32 ...........G................. GTCAACCTCGTTCCGTACCGCGTCACGCTGAC 280564 29 100.0 32 ............................. GTCTCCCACGGCGATCCGCGGTAGATCATGTT 280503 29 100.0 32 ............................. TTCGAGGTCAGCGGCTTCGGCCCCGGCGAGCA 280442 29 100.0 32 ............................. CCGGGAATGAACGTTCCCATGTCGGCTACGCC 280381 29 100.0 32 ............................. GTCGCCAGGCCCACGTCGGCGGATCACCAACA 280320 29 100.0 32 ............................. ATGTGCTTCCAGCTTTCGTCGTCCAGCTTCCG 280259 29 100.0 33 ............................. TGAAAGTCAGCGACCATGCCGGCCGGCCAATCC 280197 29 100.0 32 ............................. CCCTTCATGCCGGTGCCCTTCTGCCCGCAGGG 280136 29 100.0 32 ............................. GTGGTGCCGTGTGAGCCGGGCTTGGGGTCATG 280075 29 100.0 32 ............................. GTGATCCGCTGATAGTCGCCGTGCCCCAGGCC 280014 29 100.0 32 ............................. CTGCTGCGCGTAGGTTGGTGGCTCGCTATGTT 279953 29 96.6 32 .....................T....... GGCCTATTCCGGCCAGTCATCTCAGCTTGAAC 279892 29 100.0 32 ............................. TCGCCGGTGCGGCCGTGGGGCTACGAGCGGCC 279831 29 100.0 32 ............................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 279770 29 96.6 0 ........T.................... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.5 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : TGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCAC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : GTGTTCCCCACGTGCGTGGGGATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 291845-290228 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXWQ01000013.1 Pseudomonas aeruginosa strain MRSN11285 MRSN11285_contig00013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 291844 29 100.0 32 ............................. GCCCGCTGCCGCTTGTCATGGAACGGCACGCA 291783 29 100.0 32 ............................. AAGACTTTCGTTTTCAATCCGGGCATTAGATA 291722 29 100.0 32 ............................. CTATGTCCTTCAAGCTGATTTCCATTTCACTA 291661 29 100.0 32 ............................. GCCCGCGTGCGCATGGTTCGACGTCACCACGG 291600 29 100.0 32 ............................. TAAGGCCGCTCATCATGCCAGCAGCAAGCGCG 291539 29 100.0 32 ............................. GTACAGGTACTGCTCATCCGCGGCGTACAGCC 291478 29 100.0 32 ............................. CCGAGTCCACCGGACTGACGCTGCACACGAAG 291417 29 100.0 32 ............................. GCGATGAACCCCGCTCACATCTTGTTCGAGTG 291356 29 100.0 32 ............................. ATGGGCGTGCGCAGCGTGCGCGGGCTCGTCCT 291295 29 100.0 32 ............................. TTCGGTGAGGAGTCGGGCCTGGTGCGCTTCAA 291234 29 100.0 33 ............................. TTCATCTTTGCAAACCACCCGACTAGACCCCGA 291172 29 100.0 32 ............................. GCGGTAATCGGGGTCGTACTTCAGGCCCTCCC 291111 29 100.0 32 ............................. GTAGCCGACCAGATCCTGCCGCAGTACTGGCA 291050 29 100.0 32 ............................. TACGGGAATGATGTCTGGTGCCACCTGCCAGA 290989 29 100.0 32 ............................. CAGTTCTCTGTCGTTCATTGCTTGGCTCCTTC 290928 29 100.0 32 ............................. CATGGCAAGGGCCGCTGATTTCCGATGAGGAA 290867 29 100.0 32 ............................. CCCTTCGCTGACCGTCATACCGTTGAGGCGCG 290806 29 100.0 32 ............................. GATTATGCCGTGGCTCGGGGCGTGGAAGCCGG 290745 29 96.6 33 .............A............... ACAAGTTGCCGCTGTCGAAGGTGACGACGACCG 290683 29 100.0 32 ............................. GCCTCCATCTTGCGGGCCAGCGGGGGCAGGGT 290622 29 100.0 32 ............................. TAGGTGTGCTGGGCGTAGTCGGTGGAGTTCTG 290561 29 100.0 32 ............................. GCCGTGTCGTTCGATGGTGATGTCGTGCTGCT 290500 29 100.0 32 ............................. CAATGAGCGCGACCAGTACCGTGCCTCCGCTG 290439 29 100.0 32 ............................. CAATGAGCGCGACCAGTACCGTGCCTCCGCTG 290378 29 100.0 32 ............................. TCATCGATCGTGGCGGCTGCACTGGCTGCCTG 290317 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 290256 28 79.3 0 A..........A..C.....-..A....T | C [290247] ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.7 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCATTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTTGCATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : GTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCATGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGTGAACAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 36730-37958 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXWQ01000036.1 Pseudomonas aeruginosa strain MRSN11285 MRSN11285_contig00036, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 36730 28 100.0 31 ............................ GCTGCCGGACGAACGCACGGCGCTCCAGGTC 36789 28 100.0 32 ............................ TCGACGTGCTGGATATCCCTGCTCGCACTCAG 36849 28 100.0 32 ............................ TGCAGCGATTGCACCTTGGCCTGCTGCCGATC 36909 28 100.0 32 ............................ AGGCCAAGGCACATTCAGCGTCGCCGACCCGC 36969 28 100.0 32 ............................ ATTGGACAGCACTACCCAGCACTCGGCAGGCT 37029 28 100.0 32 ............................ ACTGTATCGCCGCAAACGAGCCCGTTCTGGCA 37089 28 100.0 33 ............................ AGTTGATATCAAGATGCCGTGCGGCTCTGTATT 37150 28 100.0 32 ............................ TCGCCCATCAGCCAGATGCAGCGCAGCGTCAA 37210 28 100.0 32 ............................ ATCCATAGAGCACGCTGTTGATGCGCACATGG 37270 28 100.0 32 ............................ ATAGAGGCCGAAGCTGTAGCCGGTGAAATCAA 37330 28 100.0 32 ............................ ACACCAAGAGTCGCGGCGACAACTACCAGACG 37390 28 100.0 32 ............................ TGCGGACCCGCGCCGAGCAGATCGCCGCGACG 37450 28 100.0 32 ............................ ACTGGAGACGAGCGCATGCACGACCCTTTCAA 37510 28 100.0 33 ............................ GACCAGGGCGTCGACAGCCGCAATCTCCATGGC 37571 28 100.0 32 ............................ TGGTAGGCCGAGCGGACAAAGGCGGTGGCGTG 37631 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 37691 28 100.0 32 ............................ TGGTTCCGGCTCAAGCAGCGCAAGGAACTGAG 37751 28 96.4 32 ..............C............. TTGGGCTTGGGAGTGCTGCAGTTAGACCTGCC 37811 28 100.0 32 ............................ AGCAGTTCGAATTCGTCATCCAGTTCTAAGGT 37871 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 37931 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 21 28 98.3 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTGGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGTTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGACGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48362-46832 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXWQ01000036.1 Pseudomonas aeruginosa strain MRSN11285 MRSN11285_contig00036, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 48361 28 100.0 32 ............................ TGAATGGTACGAATACACTGTTACCCTGAATG 48301 28 100.0 32 ............................ TTTCGGCGGAAATTCAACCCCCTGGAGACATG 48241 28 100.0 32 ............................ ATCCCGATCTGGAGCCAGGTGTCGTAGTCTTC 48181 28 100.0 33 ............................ TTGGCAACGACGATCTGCGCCCATGCTTCGAGG 48120 28 100.0 32 ............................ CACTAGGGTACAGGACTGTCGAAAGACTGCGC 48060 28 100.0 32 ............................ TACAAGGACAAGCAGAAACACTACGAGTGGCT 48000 28 100.0 32 ............................ TGATGTCCACTCGCAGTTTCAGTGATGATGAT 47940 28 100.0 32 ............................ CGGAGCAGGCATTGCGGGTGCGGGAATGCTGG 47880 28 100.0 32 ............................ ATTCGAATGAACTCCATGCTCATGGCTCCTCT 47820 28 100.0 32 ............................ CGGCGGCACCACCTGCAGCATCAGCGCACTCA 47760 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 47700 28 100.0 32 ............................ TGGAAGAACGCACTTGGACGGTCAGCATTGGC 47640 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 47580 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 47520 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 47460 28 100.0 32 ............................ GCCCAGGCACGTTTGCTCGCGCTTTGATCTCA 47400 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 47340 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 47280 28 100.0 32 ............................ TTCTGCGCAAGTTGTTCCTCGGACATCCCCGG 47220 28 100.0 32 ............................ AGCTTGGTCGCCCCGGGGCGGCCGGCGTAGTA 47160 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 47100 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 47040 28 100.0 32 ............................ CGGCGGCACCACCTGCAGCATCAGCGCACTCA 46980 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 46920 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 46859 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 26 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //