Array 1 48004-45262 **** Predicted by CRISPRDetect 2.4 *** >NZ_SUMT01000002.1 Lacticaseibacillus paracasei strain S49 NODE_2_length_155891_cov_36.032064, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 48003 36 100.0 30 .................................... TGAGGGTAACATCATGTTCCTGTTGCAGCA 47937 36 100.0 30 .................................... TAATAAACATGGCCGACGGTTCCTGGAATA 47871 36 100.0 30 .................................... TGCATACACAAAAAATGAGACAAGTATTTC 47805 36 100.0 30 .................................... TGTAAGTGCGCATTGCTTTAAAAATGGCAA 47739 36 100.0 30 .................................... GCATGATAAAGATATTAACGAAACAACGAA 47673 36 100.0 30 .................................... CCAAATTGGTTAGCACCGCTTAAAGACGAA 47607 36 100.0 30 .................................... TATCAGAGGCTTATCCATTAAACAACTGGC 47541 36 100.0 30 .................................... AAACTGCCTTCCGTTGCGATCAACTCGCGC 47475 36 100.0 30 .................................... AAGCGTTCGCTTGCGCTGGTGTTGGTCTCG 47409 36 100.0 30 .................................... TCGTAGCGGCTAACACGCTTATGGCTGACA 47343 36 100.0 30 .................................... AAAATATTTCTAGAATTAGCAACTTTATGG 47277 36 100.0 30 .................................... GATCGTTGAAGAAAGGCTGATCAATATGTT 47211 36 100.0 30 .................................... CGCAAAAAATGTTTTGACAAGAACACATCG 47145 36 100.0 30 .................................... GGCCAATATCATCAGTCGGGAGATTGTCGC 47079 36 100.0 30 .................................... GCAATCGCGATACTTTCACCGATTGCAACA 47013 36 100.0 30 .................................... GTGAAATGGAATGAATAACCTCTATGTCGT 46947 36 100.0 30 .................................... AACAAAATAATAGGAGGTTTTTACCATGGA 46881 36 100.0 30 .................................... ATGACTTTAACAATCAAATCCCAAGTTGTT 46815 36 100.0 30 .................................... TATTATCCTAACACATCCATCGAGAAGTTA 46749 36 100.0 30 .................................... TGAATATTCTAATGTTGTTGATAGTATGGT 46683 36 100.0 30 .................................... TTGTTCAAGTGCTGATCCGCAGCTTGCACC 46617 36 100.0 30 .................................... TTATTTCAGGCCTATTCAATTGGATAATCC 46551 36 100.0 30 .................................... ACTGTTTTCGTGTAGCCGCCGTTTTTAAAG 46485 36 100.0 30 .................................... CTGCTGTCGATTCGTCTAGTGATGCTGTTT 46419 36 100.0 30 .................................... CTTTTATTCGGTTCACGTTGATATTTCAAA 46353 36 100.0 30 .................................... GATGAACTTTATGACTTGATCCTTCACGCC 46287 36 100.0 30 .................................... CCTAGGTCAAACGAATCTAGTCTACAACAG 46221 36 100.0 30 .................................... TAGCTTTATCAAGACCAACGCCACCAAGAA 46155 36 100.0 30 .................................... TATGATACTTTTCAGTTGTTGATCAACGGC 46089 36 100.0 30 .................................... TAACGTTTGTATAAATTGTGATAATTCTTC 46023 36 100.0 30 .................................... CTACTTCAAAGTGAAGCCCCCCTACCAAAA 45957 36 100.0 30 .................................... TTATCAAGAAAGTCCAGCCACGGCCTCGGG 45891 36 100.0 30 .................................... CGCAGCAGGCATGAGCATCGTGCGTGAGAC 45825 36 100.0 30 .................................... TTTACAGAAACACCACCTAACTTTGCTGAT 45759 36 100.0 30 .................................... TGCCAATCACTGGTCGCCCCCTTCTTTTTG 45693 36 100.0 30 .................................... ACGTAGCCTATGGAGATGGGTTAAACAATT 45627 36 100.0 30 .................................... AGTGGGCTTAGTCACATATATTTTAGAAAC 45561 36 100.0 30 .................................... AAAAGAAAAGAGGAACAAGCGCATGGCATA 45495 36 100.0 30 .................................... TGATTTAGATAATGAGATACAAAAATTTAT 45429 36 100.0 30 .................................... CCGGCGGTGTTGGTGTAGGGGGTTCCGCAT 45363 36 100.0 30 .................................... TGACGATTTGGTGTTATCCAAAAGCCGACA 45297 36 83.3 0 .......................C.....A..TTCT | ========== ====== ====== ====== ==================================== ============================== ================== 42 36 99.6 30 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAGGATGGAGTTGTTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCGATGTATTTACTTCAAGATCCATTTTTGAGCGACTTGCCAGTCACGGTTGAACCAGGCGGTAAGCTTGAACAAATCATGAAATACTGCAACGTTCATTTTGATGAGGCTGTCACGACAGAGTCAACCTCGAAGATTGAGGCGCTTATTCAGACGTTAACTAAATTGGAGGAAAAGAAACTTGTCATTCTTACAAATGTTAGTCATTATTTAAGTGCCAGAGACTTTTCGTCGGTGACTGAACAGATCGGTGATACTGAACTTCAAGTCGTTCTCATCGAATTCTCAAAGGTGAACAGAAAGAAGTACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTCGTTGACAATCGCGAACTAGATTGATTAGGAGATTGTGTGAAAACACAG # Right flank : AAACAGCAGTGATATTAAATTTAAGCTAAACTTGTCAAAAAGTGCCTCATTTTGTGACAAAATAAGGTGTTTCACTATTTATTGTGTGAACCAAGCCTCAATATTTACAAAGCTGAACCTTTCAACGTTCAGCTTAAAAGCCGCCGTCTAAAGCAATATCGTAGTAACCACATACACTCATGCGGTGATATATCAATCAAAAACTAAGTGCTATCTAACTCCTCTTGTGATAGAATTCATTATATATGAAATCGCTTACACAACGAGGAGGAAGAACGACATGAAAAAACTAATAGTGCTCAGTGCCACACTTTTGGTCAGCATGGGGTTGGCCGCATGTAGTAGTGGGTCGAGCTCTAGTTCGAGCAAGAGCAGCAGTAGTACGACCAGTCAGACGAGTAACGCTAAGGTGAAGATCAATACCGGCGCTGATGCGAGTGCCAAGGTGCCGGCAGCCGGTACCTTAGTGATGCGTCAGCTTTATGCTGCACCGCACGGCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //