Array 1 2069841-2070066 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029703.1 Akkermansia muciniphila strain EB-AMDK-46 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 2069841 31 100.0 33 ............................... TCCGAGCCGGAAGGCGTCTGGTTCGCCCGCCCG 2069905 31 100.0 34 ............................... ACGGAAGGCTACGGGGAATGCAGCGATTACCACG 2069970 31 100.0 35 ............................... CCGCTTGAATTCGTTCAGCGTCTCGTTGATCCGCT 2070036 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 4 31 100.0 34 GTCGCACCCTCACGGGTGCGTGAATTGAAAC # Left flank : TGCCGCCCGCGACCTGGGACACGTCGCCCACGGCATCGACCTTTCCCCGGATAATGTCCGCATTGCCGCGGACCGCCTGGGCGTTCCCGTCCCCTGACCGCGGCCAGCCCGCGGAGGGTTCGCCGGGCTTCCGCGAGACACGCGCGGACCGCTGGCGGGAGTGTCTCACATGGGACAAATGACCCTTACGATTTTTCAAAATTAACCCTTACGGGCATTTATGGGCGTAACTTCTTGCGCCACCCTTCCATTTCTCCCCGGAACGCACGTATTTTCAACCGTTTTCAAGCTTCTTCAAGCGAATTCAACCCTTTTCAAGCATTTATGGTTGGTCACATCACAGAAAATTGCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGGCCGCATCCGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : CATAGGTAAACACATTCTTGTTTTGACTAGCACCAGTGAGGAATGACAGGATAGTTGATATAAGTTGAATCAGGGTTGAAATCCGTTGGAACCCTAGAAGACACGGGAGTTAAGGAGGATCAGACCAGTCATGAGCTATCTTATAAAAGTCGGAGCTGAAAAGAGGGTAAATGACAAGTATCTGATATAAGTACACAGGCTATGCAGGGATGCTGCACAAGAGCTGCAAAGAGTAGGTGATAGAGCAACGACAAGGTAAAAAATCATGATAGGATGCCCCGCATGTGTACACCTACATATTGCATCCCCTTGTACGGCTCCGTTACCGTTATATCCCCAGCAGACCGGAAGAAAAAGAACCCGCAAATTTATCACCTCCATGATACCGCTGTCGTGTTGATGTGGACAACTCGTGAGGGAAGTAAAACGACGTGCTGGGTGAGGGATATGCTCGACAACGTGTGGATTGTGATCAGGGATGAGAGAGAAGATGATTGAAA # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.74,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2103237-2103591 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029703.1 Akkermansia muciniphila strain EB-AMDK-46 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 2103237 31 100.0 34 ............................... ATTCCACAAGCTTTCGCATAATTGTTGAATTCAA 2103302 31 100.0 33 ............................... GCGGGCGCTGGTGGAGGAATTCTTGGAAGCGAA 2103366 31 100.0 34 ............................... TAATGGTTAGAGGTGATGGTTAGGCGGCCGCGAC 2103431 31 100.0 34 ............................... CCGTCAAGGCCCTCCTGACGCGCGAGGCAACCCT 2103496 31 100.0 34 ............................... TTCATTTCCACGCATGCGCGTGAAACACCGTCCA 2103561 31 93.5 0 .............................GT | ========== ====== ====== ====== =============================== ================================== ================== 6 31 98.9 34 GTCGCACCCTCACGGGTGCGTGAATTGAAAC # Left flank : TACGCATTGAGAGGCTGGATAGCCAGACGTCTTTATCGGGAGATGGATTGGAGTCTCCTGGATGACCGCGCCCCGGAAGATTGGACGATTGGACGGGAGGTATTGGCCAGGGTTCCGGCAGCATTGTGCCGCATTGATGAGCCATGGCGTAAACGTTCCCCGTGGAGTATATGGACGGCCTGGTGCTGGCCCAGCCGCACGGTAAGCGCCGAGAGTTACGCGGCCAGGTTTGCCGTGGTGATTACCGGCAGCCCCCGCATGTCCAACCAACCCGCCAGCGAACGGGCCAGAGTGATGCACCTGCTGGCCGACGCCAGGGAGAGGATGCTCCGGGAGGGAGTGGCCAGGGAGGACGACGAGGCAGTGGACTGGGGAGACCTGCTGGCCGCTTGTAAGGGGGAGGCAGAGTCGATGCAGACCCCCTGCACGGAGCAGTCAATTTGACAAGTTATATAAGATACTTGTCGTAGTTCTATCAGATGTCTTGGCGCGTTACACCA # Right flank : TTTTTATGTATGTTTGACATATTTAAATACGAATCGTTGTTTTATTAAGGGAGGGAGATATATTGAAATAAGGGTATTTGTTGCTGAAGAATGAAAGATGGATTTTTGTGTTTTTTGTTGAATGCAATATTTTGACGGAGGAAGTTGGTTTTTGGCTGATAGAGGAGAAATGACGGGAAGTGGTATTGGACGAATATGAAAAGATATTATCTGGTTTCCGGGTTATGTTTGTGCCTGTTCATGGGGATATTTTCATGTATTCCGGAAGCTCCGGAGCATAAGACGGAAAAAGATGCCTCAGCCATTGTTCTGGATGAGGATTCGGATATAATCTGGAGGAATTTTTCTTTGGGCCGCATTTCATTCGATGATAAGGCTCCGCATAGTAAAGGTTCCCGCATTTTTCGCCGATTGATTCCAGATACGGAGGTTTATATCCGTCAGTTGTCCCGTATTGTTCTCCATACGTTGTATGAGAGACCTGAAGAATGTATTATTCC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.15,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 2677877-2677577 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029703.1 Akkermansia muciniphila strain EB-AMDK-46 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 2677876 33 100.0 33 ................................. TGGAGCTGAAGGTGCTGGGGCGCATCATGACGG 2677810 33 100.0 34 ................................. TTGTATCTGTAACAAAACGGATAATATTTTTTCC 2677743 33 97.0 34 ...A............................. TTTTTGAAGAGTACGCCCTTGTGGGAGATAAAAT 2677676 33 100.0 34 ................................. ATTGGTTCTTTCATTGGTTCTTCTCAAAGGCCTA 2677609 33 93.9 0 ..................G.......C...... | ========== ====== ====== ====== ================================= ================================== ================== 5 33 98.2 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : GCTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGACAAGGCCGGGCAGCGGCGGTTGCGGCAAGTTGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAACTGCCTCCTGCTCAATTGGTTGACATTAGGAACAAGCTGCTTAAGATTATTGATAGCGAGAGTGACAGCCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTCCGGTCCCTTGATTATTTAAAGACTGTTGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGCAGGTCGGCGATTGGTGTAATGCATTGGGAATAGAAGATTGACAGATAAATACTCAGAAAGAGCAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTCTGTTGAGTAGCAATGTATAAGGTCGGGCGC # Right flank : ATGACGAGTGCAAGCTTCGAGAAGATGCCTCCCGCCGTACTCTCCAGGGAGTACGTAACTTATCTGGAAAAGAAAAAGCTCTCCAAGCTTGTTTGGTCTAGAGAGCTTTTTTGTTCCATCATCCTGTTAAGTTGTCAGGAAGAGGGGTGATTATTGAGATTGAGTTCTGCCGGGGGGAGGGACTGGAGCAGAGCCAGGATGGGGTCCTGCGGTTCGGCGCCCATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGCAGGGCTGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGGGCCAACCAGCGGCGTTTTTCTTCCGTACTGAGCAGGGGATTTTTCATGTGCCGGGGAATGTATTTTTGTCCAGCAGGTTTCCGGCAAGCTGTTCTCCATCCGCAGTGGGCCGGTAAACATAAGGGCGACCGTCTCCAATACGGTTGACATATCCC # Questionable array : NO Score: 8.97 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 2687300-2686347 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029703.1 Akkermansia muciniphila strain EB-AMDK-46 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================== ================== 2687299 31 100.0 40 ............................... CGGTTGTGAAAGCACCAGCACGGTTTCATCCTTTTCAAAA 2687228 31 100.0 34 ............................... CGGTTGGAGCGGGTTTGTCCTGCCAGTGGCTTTG 2687163 31 100.0 33 ............................... TGATTGTTCTTCTCGGTTAAAAAAGGCCCCGGC 2687099 31 100.0 33 ............................... TCCATGCTGGAAATGCTTGCGAAACTCTGCCGC 2687035 31 100.0 35 ............................... CGGCTTTATTGCCGCAACGGAGGAAAGCAGGAAAG 2686969 31 100.0 34 ............................... TTCGTGTGTGGCCGCTTCCAGGCGGAAGAGTACA 2686904 31 100.0 36 ............................... GCCCGGTTCGGCGGCTGATGACGCAGGCTCCTAAAT 2686837 31 100.0 39 ............................... GCCTGCTTCCAGTAATCCCGGTTATAGGCGTTCAGATGG 2686767 31 100.0 34 ............................... GCCTGGGTTCCGCTGTTCATGGCTACGCCGACAT 2686702 31 100.0 35 ............................... GTGAGACAGTGGGGGATAAGCTTCATTGTCGAGAG 2686636 31 100.0 33 ............................... GCCTGGGTGTGGCGGGCACGCGCCTGACGGCGG 2686572 31 100.0 34 ............................... GGTTGAGCCCGCGCCTTTCACACACGACTTACGA 2686507 31 100.0 34 ............................... CCGTTTTGCCGGAGTTTTTTGTACTGGTCATGCG 2686442 31 100.0 34 ............................... TCCGCACGCACATGACCACTTTCCGAGAACTCTT 2686377 31 90.3 0 ..........................T.G.T | ========== ====== ====== ====== =============================== ======================================== ================== 15 31 99.4 35 GTCGCACTCTCATGAGTGCGTGGATTGAAAC # Left flank : GCCGTGAAAATTCCGTTGATGGCCTGTCTGGCCTCCGCTGTTTCCGCGGCGTTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATCATGTAAACCGCGGATATTTTCCGCAGGGCGCTTCGGGACCACTGCTATCCCGGGGCGCCTCTTCTTTTGTGGAAAAGAGAATAAAACGGTTTCCGGGGAGAGGCCTACAAAATTCTGGATGGGAAAGAGGGAACAGGCTAGGATATTTCCGCATCGTGCACAGGCCTTGGTTGCCGGAGATGCAGGCTTTTTAACGCATGAAAAGCTTCTCTCCCGGTCTTCCTTCCGCCGACCCCAAGCTCACAGGAAATTTCTGGAATACCGGCGATTTTCGTAATCCGTTGGGGTTCTGATCTTGACAACTATCATCTCTTTTTAAGGCCTGGAGTCTTTGTACCTCCCATGGGAGGTTGGCGCAAAACGCCCGTTGCACTGTTGATAATCAGTGCCATAGCCGCCCCGGA # Right flank : GTCGTAGATTGAACGGCCTAATATCCCTAGAACGAGAAGGAGCATTTGGCTATAACGCTCATTAAAAACACCCTTCATTTTTAGTGAAGGGTGTTTTGACATTCGTGAAAAGAAACAGCTCAGAAGCCTTCAATCATTTCCGGGGTTAATCCCGGTAGATCATATTTCTTTACAATATTTCCATCCTCGGAGATTTCAATGGAGTGGTGGACTTTCGCAGAAGAGTATTGACCACTTTTACAGTTATGCTCCCACCAAATGACTTTTTGAATAGACATGCTGCCTTCCGGTCGAGCAGAGGAGGCGTCTCCTTCAAACATCTGAGGAAGCACTTGTTTGAAAATGGAGGCATCTTCATCCGAGAAGCCTGTGAGTTCTGCCAGCTGTGGATTGATTGCTCCAAAGAAGACATAGGTTCCCTTGTCCACCCGGTGCTTCATGCCCATGGTGTCGGAAGATTTTTTGCTGCCGTCTCCGTCATTGCTGACACTTTTCGTAAT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCATGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //