Array 1 67766-68635 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXMI01000011.1 Escherichia coli strain MOD1-EC6648 MOD1-EC6648_11_length_106145_cov_22.0793, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 67766 28 100.0 32 ............................ ACATCATGAACGCGCAGCAATATGCCGCAATT 67826 28 100.0 32 ............................ CGGCAGAAAAACCGGTCGCGCTAATGGAGAAA 67886 28 100.0 32 ............................ GCCGCAACTCACAATAACAGAATCACAAATTA 67946 28 100.0 32 ............................ TGCCAGATATTTCAGATCATGAACGGTTGCGC 68006 28 100.0 32 ............................ AGGAAATTTCCGGCGACTAACGAAACAGGTTG 68066 28 100.0 32 ............................ GTCATCGGTATCGTCACGCGCAAGGGATTCAA 68126 28 100.0 32 ............................ GTTGTAATTTTCGTACCCGGCGCGATCGCAAT 68186 28 100.0 32 ............................ AATCGTAGGGCACACCCTTACGGCAGTTAAAA 68246 28 100.0 32 ............................ AATCAGCCCGATCACTGTGCTGCGCCCCGCTC 68306 28 96.4 32 ......................C..... TCATTGGAATACATGAGTTGCGCCCATTTTGT 68366 28 100.0 32 ............................ TGGCATGCAATCACTACAGCTATTAATTTCTA 68426 28 96.4 32 .................T.......... TGAACGCGATCCGGGCGATTCGGGAGTTTTCG 68486 28 100.0 32 ............................ TTCACCGAGTGGGTGCTCGTGCTGAATGAACT 68546 28 92.9 32 ..................C.T....... CACATATACGCGAACGTCATTTTGCAGTAGCA 68606 28 85.7 0 ....................A...C.CT | T,C [68626,68630] ========== ====== ====== ====== ============================ ================================ ================== 15 28 98.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTGACGGTTGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGGCATTTGGTCATGCCATGACACTCTCAACTTCAAACCATTAGCTTCAGCACACAATAACAATCGTAATAATTGCGACAGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTTCAGGTGAATGGTGGGCGGGTGGAGTATGTCACCAGCGAAGGTAAGGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCATTGATGTTGGGGATGGGAACATCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGGATGGTACGCCGCTGTATTCAGCGAATGAAGTGGATGTCGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 77697-78744 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXMI01000011.1 Escherichia coli strain MOD1-EC6648 MOD1-EC6648_11_length_106145_cov_22.0793, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 77697 28 100.0 32 ............................ AGTAATTCCCCAATAATTCCCCGCGCAAAAAA 77757 28 100.0 32 ............................ GGAAAGTTAAGCGCCAGCGCGGCGTTGTGGGG 77817 28 100.0 32 ............................ GGAATCGCCCCTCGCTCTCAATCCAGAATTTT 77877 28 100.0 32 ............................ GAACTCCCTTTCGTGGGCGGTACGTAATGATG 77937 28 100.0 32 ............................ TCTAATATTTCAAAACCCCAACGACTGCCAAT 77997 28 100.0 32 ............................ ACAGGCACCCGGCTGATGTTCGTAGGCGACAT 78057 28 100.0 32 ............................ TGGTGGCCGGAAGAAGCTGATCACATCATGTT 78117 28 100.0 32 ............................ ATCACATTTAATTCCGTGTTTCGTTTTGAACA 78177 28 100.0 32 ............................ GAACTCCCTTTCGTGGGCGGTACGTAATGATG 78237 28 100.0 32 ............................ GGAAAGTTAAGCGCCAGCGCGGCGTTGTGGGG 78297 28 100.0 32 ............................ GGAATCGCCCCTCGCTCTCAATCCAGAATTTT 78357 28 100.0 32 ............................ AGTCCGCGCGATTTCATTGATTAACCGGAACC 78417 28 100.0 32 ............................ GGGAACAACAGGACACAATCCGCAACGGTGAC 78477 28 100.0 32 ............................ ATGTTTATTCCCTGATTAATGACGCCGTGTTA 78537 28 100.0 32 ............................ ACATCGTTTACTCCATTCGCCGCGTTAATGCG 78597 28 100.0 32 ............................ ACATTGATCAGGTTATTTCAAATACGCCCGGC 78657 28 96.4 32 ..........................G. AGCAAGCTGTCTCGCCCCTTCGGGCTTCCAGC 78717 28 85.7 0 ..G.................T..TC... | ========== ====== ====== ====== ============================ ================================ ================== 18 28 99.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTTTATGTGCTCCGTGACTGACACACACAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATGAAGAAATACCAAATCGACCCTTTTTTTAGGGCGAAATGTAACTCATTGGTTTTATTTATTTCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAACTTTTAACAATAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGTCGGCTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1238-172 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXMI01000137.1 Escherichia coli strain MOD1-EC6648 MOD1-EC6648_137_length_1344_cov_15.3418, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1237 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 1176 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 1115 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 1054 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 993 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 932 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 871 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 810 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 749 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 688 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 627 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 566 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 505 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 444 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 383 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 322 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 261 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 200 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAG # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 63256-62554 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXMI01000018.1 Escherichia coli strain MOD1-EC6648 MOD1-EC6648_18_length_78550_cov_26.0278, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 63255 29 100.0 32 ............................. AACCCGCGCCGTCGGCTATAACATCTCTGAAA 63194 29 100.0 32 ............................. ATTTTTGCGGTATTCTCCCAGCCGCCCAGCAG 63133 29 100.0 32 ............................. GTCCATGGCCTGACGAAGCTCGTAATATTTTG 63072 29 100.0 32 ............................. ACGACCAAATGATCTACGCGTATTGCCACCTC 63011 29 100.0 32 ............................. CCCCGCACACGTAAAGGCGTCGGCATGGATGC 62950 29 96.6 32 ............................C CCAGCGCCAGACGGGAACACAATTTTAAAGCC 62889 29 100.0 32 ............................. TTGTCGGGGATCTGTTCAAACTGACTCATTAG 62828 29 100.0 34 ............................. GGGGCGCATTAACAGAGAGAAAAACGCATAGGCC 62765 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 62704 29 100.0 32 ............................. TCGCTATTGCCGGTAGTGTCGCTGATAGACTC 62643 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 62582 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================== ================== 12 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCTTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //