Array 1 1-699 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV838145.1 Neisseria sp. HMSC70E02 Scaffold1185, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1 32 97.0 34 -................................ AGGCTTGGCAAAAACGCCAAAAATAGGCGTCCCA 67 33 97.0 34 A................................ TTCTTCTGGTCGTGGTGCTACGCCCGGTTCTGGT 134 33 97.0 32 G................................ CCTTTTGATCGTAAATAGGGACTTTGATAGAT 199 33 97.0 33 A................................ ATCCAACAGGTTCAAAACCATATTGGCGGTTTC 265 33 100.0 33 ................................. ATACGAATTTGTCGTATTCGGATTTTTGAAAGA 331 33 100.0 34 ................................. AGCACCCTACACACCGCAAGGCAGCAATACACCG 398 33 100.0 36 ................................. GGGTATATGTAACCCCAGTTTTCCTGTTTACGCCGT 467 33 97.0 35 G................................ AGCGGCTATCAGCAGGCCGTAACGGTAAAGCGCGT 535 33 97.0 33 T................................ GACCAACGGCTGCAAAACCATTTCGACGACGTT 601 33 100.0 33 ................................. CCTGAAGACGCATTGCAAATCGTCTATATCATG 667 33 97.0 0 G................................ | ========== ====== ====== ====== ================================= ==================================== ================== 11 33 98.1 34 CCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : | # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCTGGAAGACTTTTTCGGAGAGTGTGATCCTGAATCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGCTCTACCCACGGTGGCGGATAAAGTCTGACTTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTTGGTGTCGGTGCGTCATCTATTGGCAATATGGTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGCAAAAAGCCGTTTGTCAAAGTGACTTTGGACTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCGCGACTGGCACCTGCACCGCGACACGGAGCGGTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 865-1163 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV838145.1 Neisseria sp. HMSC70E02 Scaffold1185, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 865 33 100.0 33 ................................. GCTCTACCCACGGTGGCGGATAAAGTCTGACTT 931 33 100.0 34 ................................. TTTGGTGTCGGTGCGTCATCTATTGGCAATATGG 998 33 100.0 33 ................................. AGCAAAAAGCCGTTTGTCAAAGTGACTTTGGAC 1064 33 100.0 34 ................................. CCGCGACTGGCACCTGCACCGCGACACGGAGCGG 1131 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================== ================== 5 33 100.0 34 TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GCACCCTACACACCGCAAGGCAGCAATACACCGCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACGGGTATATGTAACCCCAGTTTTCCTGTTTACGCCGTGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACAGCGGCTATCAGCAGGCCGTAACGGTAAAGCGCGTTCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACGACCAACGGCTGCAAAACCATTTCGACGACGTTCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCCTGAAGACGCATTGCAAATCGTCTATATCATGGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCTGGAAGACTTTTTCGGAGAGTGTGATCCTGAA # Right flank : | # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.20,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2-499 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV838149.1 Neisseria sp. HMSC70E02 Scaffold1228, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 2 33 97.0 33 A................................ ACGACACCGTGCCTACCGCTTTGCCTGCTTCAT 68 33 100.0 38 ................................. CTCCTTCATGACTGCCCGCTGCACCCCGAATATCGATA 139 33 100.0 34 ................................. GATATTTCCAAAGCACTGAAAACCCACACGATAG 206 33 100.0 33 ................................. AGGCAATGAAAGAACTATCTTTTCCCCATTCAA 272 33 97.0 29 A................................ TGCTCACCATATAACTCCTTAAGGCCTCA 334 33 97.0 34 G................................ TTGCTTTGCCTCGCTGATTGCCTGCGCTCTCGTG 401 33 97.0 33 T................................ TTTGATGTTGCTGTATTACTCAACCTACCCAGC 467 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ====================================== ================== 8 33 98.5 34 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : AA # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTCCGCCCGCCAGCGTGTAGGCAGCGCGCACTTTGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGAAAATACCCAGTTCGCGGATTTGACTTGCGCCCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGTTTGGACGCTGCGTAGATGCTAAAACCTGCGAGATCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACCCGATGGCTTGCCGACGTTAAAAGCGAGGATGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [3.3-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 664-831 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV838149.1 Neisseria sp. HMSC70E02 Scaffold1228, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 664 33 100.0 33 ................................. GAAAATACCCAGTTCGCGGATTTGACTTGCGCC 730 33 97.0 36 C................................ TGTTTGGACGCTGCGTAGATGCTAAAACCTGCGAGA 799 33 97.0 0 T................................ | ========== ====== ====== ====== ================================= ==================================== ================== 3 33 98.0 35 GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GTTGAAACGATATTTCCAAAGCACTGAAAACCCACACGATAGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGGCAATGAAAGAACTATCTTTTCCCCATTCAAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGCTCACCATATAACTCCTTAAGGCCTCAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTGCTTTGCCTCGCTGATTGCCTGCGCTCTCGTGTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTTGATGTTGCTGTATTACTCAACCTACCCAGCCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTCCGCCCGCCAGCGTGTAGGCAGCGCGCACTTT # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACCCGATGGCTTGCCGACGTTAAAAGCGAGGATGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGCTCGTTTACCGCGCCGACCACGCTGCCGCGCTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACTGAATGACGGCTTGACGGCTGACGATTGTGTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTCTGGAAACGTACAGCAACAGCGGCTTCTTCGACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [33.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 931-1164 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV838149.1 Neisseria sp. HMSC70E02 Scaffold1228, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ================================= ================== 931 34 97.1 33 N................................. CCCGATGGCTTGCCGACGTTAAAAGCGAGGATG 998 34 100.0 33 .................................. GCTCGTTTACCGCGCCGACCACGCTGCCGCGCT 1065 34 100.0 32 .................................. CTGAATGACGGCTTGACGGCTGACGATTGTGT 1131 34 97.1 0 .................................C | ========== ====== ====== ====== ================================== ================================= ================== 4 34 98.6 33 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACA # Left flank : AACTTTGATGTTGCTGTATTACTCAACCTACCCAGCCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTCCGCCCGCCAGCGTGTAGGCAGCGCGCACTTTGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGAAAATACCCAGTTCGCGGATTTGACTTGCGCCCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGTTTGGACGCTGCGTAGATGCTAAAACCTGCGAGATCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CTCTGGAAACGTACAGCAACAGCGGCTTCTTCGACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCGTCCCATCGGGCATGGCTTTAATATCAAAACCACCAGCCGCCTTTAGGCGGCTGTGTGTTGAAACGTAGTTATTGCGCTCCTGCTCGAACAAGTATTCCCCAGCCGCCTTTAGGCGGCTGTGTGTTGAAACCTCATAGAGTTCTTTAACGATTTTAAGACGGGTACCAGCCGCCTTCAGGCAGCTATATATCAGTACAACTCAGAGATTTCTTACAACAAAGGTCGTCTGAAAACCTTATCAATCGGTTTTCAGACGACCTTTTTCAGCCATCAACATAAGCCCGATACTTTGGAATAGGC # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.20,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 1330-1562 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV838149.1 Neisseria sp. HMSC70E02 Scaffold1228, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 1330 32 93.8 34 N..........C.................... CGTCCCATCGGGCATGGCTTTAATATCAAAACCA 1396 32 100.0 34 ................................ GTAGTTATTGCGCTCCTGCTCGAACAAGTATTCC 1462 32 100.0 34 ................................ CTCATAGAGTTCTTTAACGATTTTAAGACGGGTA 1528 32 81.2 0 ...........C....A...A.A.A.A..... | C,T,C [1554,1557,1559] ========== ====== ====== ====== ================================ ================================== ================== 4 32 93.8 34 CCAGCCGCCTTTAGGCGGCTGTGTGTTGAAAC # Left flank : ACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACCCGATGGCTTGCCGACGTTAAAAGCGAGGATGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGCTCGTTTACCGCGCCGACCACGCTGCCGCGCTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACTGAATGACGGCTTGACGGCTGACGATTGTGTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTCTGGAAACGTACAGCAACAGCGGCTTCTTCGACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CTCAGAGATTTCTTACAACAAAGGTCGTCTGAAAACCTTATCAATCGGTTTTCAGACGACCTTTTTCAGCCATCAACATAAGCCCGATACTTTGGAATAGGCTATGGGCATCAGACAGATAGGTTAGCCGATTCGGGCATCAGAATTTCACACCTTTATGCAAGGCTACGATGCCTGCGCTCATATTATGGTAATCAACGCTGTCGAAACCGGCATCCAGCATCATTTGTTTCAATGTTTCCTGGTCAGGGTGCATGCGGATGGATTCTGCCAGATATTGATAGCTGTCTGCGTCTTTGGCAATAAGTTTGCCCATGACCGGCAGCAGTTTGAAGGAATACAAATCGTATGCGCCTTCCAGTGGCTTGTAGACTTTGGAAAATTCCAACACCAAGAGCGTTCCACCCGGTTTGAGCACGCGGTACATTTCTTTGAGTGCAGCATCTTTGTGGGTCATGTTGCGCAAACCGAAAGCAACGGAAACCAGATTGAAATAGTTG # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCCGCCTTTAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCAGCCGCCTTTAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 122340-122842 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV838125.1 Neisseria sp. HMSC70E02 Scaffold978, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 122340 33 100.0 35 ................................. ATTCCCAAAAGTTCAAGAAACACGCTTGTGGTAGG 122408 33 100.0 35 ................................. AGTCCTTTGATCAAATCCATAAGCAGGATTTATAA 122476 33 97.0 32 A................................ TTATGGTCTGCCTAAGAAAGATATGGGGTGTG 122541 33 100.0 33 ................................. TTTCTCAGGGGAAAATCTAGGAGAAATAGAATT 122607 33 100.0 36 ................................. GATTACATACGGCGGAATATCCTTCAGATAGTCCTC 122676 33 97.0 36 C................................ TGGTACCACCCCTGCCGGAAGTAACACAAAAGCCCA 122745 33 100.0 33 ................................. GTCAGGCGGTGGCGGCGGTGGCTCGTCAGGCGG 122811 32 97.0 0 ................................- | ========== ====== ====== ====== ================================= ==================================== ================== 8 33 98.9 34 TCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : TGCACATGGGAATACAAAATGCTGATGCTGATTACTTATGATATTTCGCTGGAAGACGCGGAAGGGCAGGCAAGGCTGCGGCGCGTGGCGAAATTGTGTCTGGACTACGGCGTGCGCGTGCAATATTCAGTGTTCGAATGCGACATTGCGCCCGACCAGTGGGTTGTTTTAAAGGACAAACTTTTGAAAACCTACAACCCCGAAACCGACAGCTTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCACAAAGTGGAACACCACGGCGCGAAACCGGCGGTGGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCCAACCTGCGGTTCTCATGAAAATGCGGCAGGGTTGGCGAATTGGGATTGTTCTTTAACAATCAGGATATTGCGAATGCGGGTGTAACGGAAAAGGCTGTGTTATACTCGCGTTCGCGCTTTTCTTGTGAGCCTAGCGAAATCGGGGCTGCTAAACCTGATGGAGCAAGGGTTTTGAGAGAGGC # Right flank : | # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //