Array 1 254206-255075 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_NYGC01000006.1 Listeria monocytogenes strain CFSAN049286 CFSAN049286_contig_0000006, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	=============================	=====================================	==================
    254206	    29	  93.1	    35	..........T...T..............	GACATTAATTTTATTGCTTTATCACTGAACTCAGC  	
    254270	    29	  93.1	    37	..........T...T..............	GTAGTTTGTGACCGTTTAAAAACATAATTTGAAAAAC	
    254336	    29	  96.6	    36	..............T..............	TTACCCGTTTCATCATTTCCAAGCGTTGCATCAATG 	
    254401	    29	 100.0	    37	.............................	TCTGTATAATAAGAAGTACGTTTTGCGACTGGTGCCA	
    254467	    29	  93.1	    35	..............T...A..........	TCTTTTAACCTAGCTCTTATCAATGTTTGAGTAAC  	
    254531	    29	  93.1	    36	A..............C.............	GATTTAAAGTTAGATATAAATAATGTGATTTTAGTT 	
    254596	    29	  93.1	    35	..........A...T..............	ATTTACGCAAGAACTGGAACTATTAAAGCCGCTAT  	
    254660	    29	  93.1	    36	.........G....T..............	AAAGGTAATACGAATTTATCTGTTAGTTGAAAAATC 	
    254725	    29	 100.0	    34	.............................	GTGTACTCTAATGCCAAATTTAATTCCTCCTATT   	
    254788	    29	 100.0	    36	.............................	TCGACATAACACATATATTTAAAATCATTAAAACTA 	
    254853	    29	  93.1	    36	..........A...T..............	AATTGTTTGGCTAAAGCGTCAGAATAAGATGTTGTG 	
    254918	    29	  96.6	    36	..............T..............	AAGGCAGTTAAGTAAGCAGCGACAGGGAACGGAAAT 	
    254983	    29	 100.0	    35	.............................	GGAATCACGGACAGTCAGGCGAAGATAACTAAACT  	
    255047	    29	  79.3	     0	......A.......TCA.A....A.....	|                                    	
==========	======	======	======	=============================	=====================================	==================
        14	    29	  94.6	    36	GTTTTAGTTACTTAATGTGAAATGTAAAT	                                     	       

# Left flank :   GGCGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCTGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGTAAAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAATACCGGAGACCGACAGAAAGTTGTAAGTGGCTGGGGGAAGGGAGGTTTGGCGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG
# Right flank :  TTCCTCCATACACAACTCCACCACCATCCATCAAAACCAAAAAAACGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATGATTGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCAC

# Questionable array : NO	 Score: 5.43
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.44,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTTACTTAATGTGAAATGTAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:79.31%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-1.20,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [3-9] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
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