Array 1 1070350-1071293 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR130552.1 Escherichia coli strain MS14386 isolate MS14386 chromosome 1 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1070350 29 100.0 32 ............................. AGATTTGCCAAATTACGGACCTGATGCTGGGT 1070411 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 1070472 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 1070533 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 1070594 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 1070655 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 1070716 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 1070777 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 1070838 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 1070899 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 1070960 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 1071021 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 1071082 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 1071143 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 1071204 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 1071265 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACATTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1099791-1101588 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR130552.1 Escherichia coli strain MS14386 isolate MS14386 chromosome 1 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1099791 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 1099852 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 1099913 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 1099974 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 1100035 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 1100096 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 1100157 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 1100218 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 1100279 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 1100340 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 1100401 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 1100462 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 1100523 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 1100584 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 1100645 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 1100706 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 1100767 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 1100828 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 1100889 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 1100950 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 1101011 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 1101072 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 1101133 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 1101194 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 1101255 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 1101316 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 1101377 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 1101438 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 1101499 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 1101560 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 30 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //