Array 1 149041-148832 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZPC01000019.1 Pseudomonas delhiensis strain RLD-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 149040 28 100.0 32 ............................ AGATGGAGCGCTATGCGGCGCGCTTGAACAAA 148980 28 100.0 32 ............................ TGGAGGTAAGCGCCTCCGGGAAGCTTGTAATT 148920 28 96.4 32 ......................G..... CAACGACGCCGCCGTGTGTTCATCGTCGCAAG 148860 28 67.9 0 ..........A.AC.......AGT.CTC | A [148837] ========== ====== ====== ====== ============================ ================================ ================== 4 28 91.1 32 CTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GTTCGAGCAACTCACCGACGCCCTCGAACACCCGGTTCTCGTACAGCCCGGTGTCCTTGAAGCGTACCCGGTAATGGTTCACCGCCTCCCAGGCACGGGCCTCGTCGAAGCCATAGGTGCTCATGAAGCACTGCAGCAGCGGCGGCCCGATGAAATGCTCCAGCCGGCGCAGGTCCGGCTCGTCGATGCCGAGCTGGGCCAGGGCGTACTGGATCGAACGGGTGATGCCCTCGCGCGGGTCGGTGAGGGTGCCGTCGAGATCGAAGAGGATGTTCTGGTAGTGCATGGGCGAGGCTGGGGCAGGAAGAATCGAACAGAAAGCATACCGCCGGCCTGCGTACCGACCAAACGCGGATGCCATGAGTTCCTACCCTTTTTCTGAAGTACCTTTCAGGTCCCATGAAAATCAATGGGTTGGAGAGAGCCCTGAAAAAAGGGTTATGCGTGTGTAAATGGTACTTTCCCGTGGGAAGTCAGGGAGTTGCGGAGTAATATCCCTA # Right flank : AGTCAACCCCACGCCTATCCGGCATACCCCTCGGCAATATGCCGGTCCTTCAGCTTCACATAGTTGCCCGCGGTATAGGCGAAGAATGCCCGCTCCTTGTCGGTCAGCGGGCGGGCCTTCTTAGCCGGGCTGCCGACGTAGAGGAAGCCGCTTTCCAGGACCTTGCCCGGCGGGACCAGGCTGCCGGCGCCGAGGATCACTTCGTCCTCGATCACCGCGCCGTCCATGACGATGCAGCCCATGCCCACCAGCACGCGGTTGCCCACCGTGCAGCCGTGCAGCAGCACCTTGTGGCCGACGGTGACTTCGTCGCCGATGGTCAGCGGGAAGCCGTCGGGGTTGTAGGGGCCGGCGTGGGTGATGTGCAGCACGCTGCCGTCCTGGATGCTGGTACGGCTGCCGATGCGGATGCGGTGCATGTCGCCGCGCACGGTGACCAGCGGCCACACCGAGCTGTCGGCGCCTATTTCGATGTCGCCGATGAGCACGGCGCTGGGGTC # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 147928-147287 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZPC01000008.1 Pseudomonas delhiensis strain RLD-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 147927 29 100.0 32 ............................. TTCCCGCCAGGAGCCCCCTGATGTCCACTATC 147866 29 100.0 32 ............................. ACGGCATTCACAACCGTAGCGTCAGGCAACTT 147805 29 100.0 32 ............................. GTCAGGACGCTGATGACGGTCCAGCCGATGAT 147744 29 100.0 32 ............................. GAAACCCCATGAGCGATTTCAAGAAAGGCCGG 147683 29 100.0 32 ............................. GACCCGCACTATGCGGCTGTCCTGGGCACCCG 147622 29 96.6 33 ..A.......................... AACGCCAGCAGATGGCCGCCGGGCTTCAGTACG 147560 29 96.6 32 .............A............... GCGACGAGTCCGGATGTCTTGGCCTAGTCGCG 147499 29 100.0 32 ............................. TCGCGGCGGGCCGCCAGCCAGGCCTTGTAGGC 147438 29 100.0 33 ............................. ATTGATCTCGCGGGTCTCGTAGTCCACGGCCCC 147376 29 93.1 32 ................T..A......... AACAACAAGTTGCTCGTTCGCCCCGTCCGTAG 147315 29 79.3 0 ..A........GTA..........TG... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 96.9 32 GTGTTCCCCGCAGGTGCGGGGATGAACCG # Left flank : GGGCGGATCATCCCGAGCATCGAGGAAGTGCTCGCGGCCGGCGGAATTTCTCCCCCCGAAGCACCACCGGAATCGGTGCCCCCGGCGATTCCCAACCCCGAGGGCATCGGCGAGGCCGGTCACAGGTCGCAGGGATGAGCTTTCTCGTCGTGGTGACCGAAAACGTCCCGCCGCGCCTGCGCGGCCGGCTGGCCATCTGGCTACTGGAGGTGCGCGCGGGCGTCTACATCGGCGACGTGTCCCGACGCACGCGGGAAATGATCTGGCAGCAACTGAGCGAAGGCCATGGGGATGGCAACGTCGTGATGGCCTGGGCAAGCGCCCATGAGTCCGGCTATGAGTTCCAGACCTTGGGGCCGAACAGGCGTTTGCCCGTGGAGTTCGATGGCTTGCGATTGGTGGCTTTTCAGCCGCTGGATAGCCCTGATCTTTAAGGAGAAAAATTCGGTAGATTTTTAGCGGCTGATTTTCTCTTTGTAGAACAGTTGGTTACGCTAAGA # Right flank : CCGGAGCAACTGGTCGGCTCACCGTTCAGGCACAAAATCCGTCATCCCCTTCCTGCAAATAAGCAGGCAAGATGGAGCTGATCGCTCAGACAGGAAGCCCACCATGAATGCCGAGCTCGGCGACGCCTTCGTCGTCGCCCATACCGCAGAAGAGGCGGTCGACCGCCTTGCCGCCCTGCACCAGCGCGCCACCGGGGCGCTCAGCCAGGCCCTGCGGCGCTACCTGAAGACCCGCGAGCAGCCGGCAGCCGAAGAGCGTGCGCTGTTCCGCTACCCGCTGCTGCGCCTGTCCTACCTGTGCCAGGGCGAAGTGCCCTCGACCACCCGCGCCTATGCCAAGGTGCAGACGCCGGGCAACTACGCCGTCACCATCACCCACCCCGAGGCCTTCCGTAAGTACCTGCTGGAGCAACTGCGGCCGCTGATGGAAGACTTCACCGTGCGCGTCGAGGTCGGCCCCAGCGAGCAGAACATCCCCTATCCCTACGTGGTGGAGCAGG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAGGTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAGGTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 156962-156500 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZPC01000008.1 Pseudomonas delhiensis strain RLD-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 156961 29 100.0 32 ............................. ACTCCTTGCGGGTGCGCTCTTGCTTGCGCTTA 156900 29 100.0 32 ............................. TTAGCGGCGGGACGATCTACTCTTCGAATAAC 156839 29 100.0 32 ............................. GTTTTCTTCGGAGCTTCCATGTCGGTCGTGGC 156778 29 100.0 32 ............................. GCCTGGAACACCGGGGCGCCGAACTGGACGGA 156717 29 100.0 32 ............................. TTCTGCAGCTCGGCACGCCCCTGCTGGGCATC 156656 29 100.0 32 ............................. TCATAATCAGCTTCCTCCTAAGTGAGCAGGTT 156595 29 89.7 32 .............GG......G....... TACGTGAACAAGCGCTCCGAGATATGGGGTGA GT,TCGC [156572,156580] 156528 28 86.2 0 A..........A............C-... | T [156502] ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.0 32 GTGTTCCCCGCGTATGCGGGGATGAACCG # Left flank : TGGGCGGCGCCGGCTACGTCGAGGACACCATCCTCCCGCGGCTGTACCGCGAGGCCCCGGTGAACTCCACCTGGGAAGGCTCGGGCAACGTCCAGTGCCTGGACGTGCTGCGCGCCCTGTCGAAGGAGCCGGGCGTGCTCGACGCGCTCTTCGCCGAACTCGGCGACGGCCACGGCGACGCCCGCCTGGCCGCCTTCATCGGCAACCTCAAGGCCTCCTTCGCCGACACCGCCGACATCCAGTTCCGCGCCCGCCAGCTCACCGAGGACGTGGCCGTGGCCCTGCAGGCCAAGCTGCTGCTGGAAGCCGGCAACGCCACCGTCGCCGACGCCTTCATCGGCAGCCGCCTGGGCAACGGCGGCCGCGTCTACGGCACCCTGCCGCGCGGCACGGACGTCGAAGCGCTGGTGGCGCGGGCCACGCCGCATCTGGCGTGAGGAAAGGTCGGTAGAAAAGAGAGTCTTGAAAAAACGGCGCTGGATCAATAGGTTGCGGGAAGT # Right flank : ATGGCGCTTCGTTCGCCTTCAAGGGCTATCGTCGCCCTCTGTGTGTCATTGACGCAGATGCTGGCGAATGCTGGCATTTTGCAATAATGTCGAACGCCATTGGTGGACAGTGGAGGTTCCCGGATGGGCGAAGGCAGGCTGTCGTTTTCCGGTCTCAGCGCTGCTGGTCGTGCAGTCTGGGCGAAGAGCGGCGACGAGGGCGGCCATGGGCTGCTGGCGCACCTGCTGGATGTGGCGGCGGTGGCCGAAACGCTGCTGGAAATCGAGCCCGCCTCGACTCGACGTTGGGCCTCCCGTGCCCTTGGCGTCGACGAGGCCGAAGTCGGGCGCTGGGTAGCCGCCATCGCCGGGTTGCACGATTTCGGCAAAGCCATTCCCGGCTTCCAGGCGAAGTGGCCGGATGGCATGGCGGCCGACCAGGCCCATGGGCTGGCCTTCCCTGCCAGTGCCTGCAACCAGGGCCGACACGACCTCGCGACAGCCAGCCTGCTGGGTAGGGC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //