Array 1 503232-502270 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZCT01000001.1 Lacticaseibacillus zeae DSM 20178 = KCTC 3804 strain DSM 20178 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 503231 32 100.0 34 ................................ AAGTTTTCAAGGTATCGGGAAGACAATAGGCGAA 503165 32 100.0 34 ................................ TAGGTGGTGGGTTGATGCCTGGGCGTTTGCTAAC 503099 32 100.0 33 ................................ CGCTGAAACTTATGCACGGCGTTACTCCTTGTC 503034 32 100.0 34 ................................ TTCTGCCAGTAGACTGAGAATCGCATACCGCTTT 502968 32 100.0 33 ................................ TTTTTTATTGCGGCTAGTCGCTTGTTTAATGCC 502903 32 100.0 35 ................................ TTTTTGTGCAGAATTCAGACGCGACTGAAATAACA 502836 32 100.0 36 ................................ TGGAAAAATAATGAAATGCCTAACCCATTTATGCAA 502768 32 100.0 35 ................................ TTTCCTTTTTGGCCTTTTCCACGGTCTCACCTCCT 502701 32 100.0 35 ................................ TTGTTGCCAAAAACATTGTAGTAACGCTTGGCCGG 502634 32 100.0 34 ................................ TAATAAGGGTATTAAGGAATCTACTGAGGAGAAC 502568 32 100.0 34 ................................ TTGAATGTCATTATATGCTTTTACGCCGATGAGA 502502 32 100.0 35 ................................ TTGTTGGCGATAGCCTCAAGACTGTCAGCCACGTT 502435 32 100.0 35 ................................ GCAAGGGTTTAGCGGTGCAGGCCATTAGCAACAAG 502368 32 96.9 35 ...............G................ GAAAAGACTAGCACGGCGCTCGGTAAGGTTAATGC 502301 32 84.4 0 ....T......T..........T.T.....T. | ========== ====== ====== ====== ================================ ==================================== ================== 15 32 98.8 34 GTCGCAGTCCACGTGACTGCGTGAATTGAAAT # Left flank : | # Right flank : TCTTATGATCTTAAGGTTGGTGGAGCACAATTTTTAGTCCACATGGCTACATGAATTACAACTCGCGACTGTCTGAACCAAAACAACGTTGCAGTTAGGCGTTTTGATAACTACCTGCAGCGTAGTCCTCGTAATTGAGTGCCTCGAGAATAACAACAATACTCAATAACGGTGATTTTAAAAATGGCCTCTTCCAATAACAGGGAAAACGCCATTTTATTATATTGAACATTGAATTACATATCGACCATGATTAACATCTGTAAATCAACAATCTCACAGGAAAATACGCCGTTCATTCGTGCACTTTGACAGTTTGATGATCTTGAAAATATGCGTGGGTTATCTCTCTCCAGCGTGTTTCATGAAAGACGGCTGCCTGATAAGGGTTAAGACCATATGTGCCAAGGGAGAAGCCATCGTTTGCCTCAACGACTAAAGTACGATTATCTGCTGTAACACCAATATCAATGGAACACGTGTTTGGTGCTTCTTTCCAA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGTCCACGTGACTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCAGTCCACGTGACTGCGTGAATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.30,-5.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 102069-99506 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZCT01000006.1 Lacticaseibacillus zeae DSM 20178 = KCTC 3804 strain DSM 20178 Scaffold6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 102068 32 100.0 35 ................................ TAATACACAAACTAGCAATAACAATATATCACCAG 102001 32 100.0 34 ................................ CTATAAGCATGGCCTTTTTAGCGTCCGGTATGCT 101935 32 100.0 34 ................................ CCAGTAGGTTACTACCACTACGAGCAACGGCTAA 101869 32 100.0 33 ................................ GCTCATTCTCTCGTGATACAGGACTTGTCGATG 101804 32 100.0 36 ................................ TTAATAGGCCTAAACAGTCTAACAAATGACTTTAGC 101736 32 100.0 33 ................................ ATCCGGCAACAAGTACGCCAGCAACTAATGCAG 101671 32 100.0 33 ................................ TGGAATATTCAAATCCCCCTGTGGGTATAGTCA 101606 32 100.0 34 ................................ CACTTGGAATAAGATCTGGACACCAATTACAAAG 101540 32 100.0 34 ................................ TGTATCTGACCAAGAGAAGATTACTAAGGCTGGT 101474 32 100.0 35 ................................ TTACCAGTTGGAAAGGCACTCATGTTTGTGCCCTT 101407 32 100.0 35 ................................ GGATCAACAACAGTCTGAATAACCGACTTGCTCGT 101340 32 100.0 36 ................................ TCATCCGTATAACCGCCCTTGCTATCACTGACAAAC 101272 32 100.0 34 ................................ ACCTTAAGCCGATGTTGATTAACATAATCAACTA 101206 32 100.0 33 ................................ TGTGGCGTATCGGCCATGCCGGCAATGCTGGAA 101141 32 100.0 33 ................................ GTTAACCGACCACTGTTTATTAGTGTCGTAAAC 101076 32 100.0 35 ................................ GCTTTGGCGTTGGTCTTAATAAAGCTTGCGCCGTC 101009 32 100.0 36 ................................ TGCTGTGAATGACGAATCAGCATGTAGTACGCCCCT 100941 32 100.0 33 ................................ CGGCAAGGGTTGCCGTCATATAATAACGGCCGG 100876 32 100.0 34 ................................ TACGACTGATGGCGCGGTTGTCAAGCTCGCGGGC 100810 32 100.0 35 ................................ AGCCGGAAATGAACGAGAAGAAGGCGAGGGAGGAC 100743 32 100.0 34 ................................ GCGCTGGTGGGCTGTCTGTGCCTTAGATAACTTA 100677 32 100.0 35 ................................ CGCAATTTTATTTTGCTTAGCCGTTTTTAGCTGTT 100610 32 100.0 36 ................................ ATGTGTTAACCCCCTGATTAATCATAAATTTCATAA 100542 32 100.0 33 ................................ TTATTGTGCAAGCGCACGCAATGACAATATTTC 100477 32 100.0 36 ................................ ATTACCTCTTTTAACGGACGCCCTAAAACCCCGGAA 100409 32 100.0 35 ................................ TTCGTATTTAAATAAGTTTAAATAAATCTTGTTTT 100342 32 100.0 35 ................................ TCAAGATATGGGCTTGAATATTGATATGAGTGGTC 100275 32 100.0 34 ................................ TCCGAAGATAACCATTTCTGGTACATATCCTCGT 100209 32 100.0 34 ................................ CCCGTTAGGGTAATGGATATGCAAACGCATAAGC 100143 32 100.0 36 ................................ AATAACAGCATTCAGAATCGCGTTTGAATCTGCACC 100075 32 100.0 35 ................................ AATCTCACTTACCTCCACTCTCGGATTGACTTTGT 100008 32 100.0 35 ................................ ATAGTCGCCGGCGCGGAACCGATTATTACTAAACT 99941 32 96.9 34 .........C...................... ACATCTTCTTAATGAGTTGATTGAATTTTGCTTT 99875 32 100.0 34 ................................ TCCCGGCCTTAGCACCGCCGTGTAATAACCACGA 99809 32 96.9 37 ......C......................... CAGGAACTTGTGCTTAACGTTGTCGTAAATGGATCGC 99740 32 100.0 36 ................................ AAATTGAGCCATTGACCGCCCTTGCGTGTGCTCACC 99672 32 100.0 36 ................................ ACTCCAAAATACCTGTCTGGTCTCGTTGGTGTCTGC 99604 32 100.0 35 ................................ CGCAACTAAAGGCACATCTGCGGATGGGCAAGGAG 99537 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 39 32 99.8 35 GTCGCAGTCTACGTGACTGCGTGAATTGAAAT # Left flank : TATGTAAGTACATTGTCTTTCCAGGCTTGTTCAATATGAATAAGTGCCCATTGACGTTTGCAAAAAACGAAATGCTGAATGCCGGATATTAAAAGCCAATCCTCTTCTGAATAATACAATTGAGTCACCTCCAAAGCAGCTATTAAATTCGCCTATGCTCATTATTTCACCTATCGTCTTTGATTACCAGCATAAGAAGTCAAAAATATAGCGCTTACAAGTTTGTGGCCAAAAGCTTTTTCAAAATTTAGTTGATCATATCAGGCAGGCATTGAAGATACGTTAACGTACTATGGTATATTGTTATTGAAGAACAACATGTTTTCGACAATGAAGGTCTGAGTGCGAATGTAGGGCACACATGAAATCGCCGGTACATTCGCACTCCTGTTGTTAAGTATATTTCGCAATTTGACTTGCTCTTTGCTTTTCTTGTGTTTTATAAATAGTTCCAGCCACAACATATTCGTGTTATGTGTTAGGAAACACATTATGTTGTG # Right flank : AGGATTGATTATAGCGGCAATTAAGTCTCGTAATCCTCATAATTACATGAGCTAAAATACGCCCTTTGAAGAAGCATATGGGGGTTAAATCATTCCAATTAAATGGGATGCGCAAAGCAAAATTATTGCTTGAAGCCTGCACTTTCTCCGCAAAAAAACCAGCATGAAACCCGACTGGAAGTCTGGCACATGCTGGCTTATTTGCTTGGAATGTCTGCTGAATTTACCTACAAATCCTTTCGCCATAAAGCTAAAACCGACAAGATAATAGCAGTCATCAAAGTTGTCTACAGCTCATATCGTTAATAGTTCATACAGTTAATTTCTTTAGATATCTTGCGATTTTTAATATAGTGTTAGTCTTTTTTCACCCATCCGTGACACTATGCGGCTTGCCCTCAACCCTGAGTACCTCTTCAACACTAGGCCGCTCACGCATTGATTCGTCAAACGCCCGTAGCTTTTGCAACCCATCAAACGAAAAGCCAAGCCGTCGCATC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGTCTACGTGACTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCAGTCTACGTGACTGCGTGAATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 110984-113164 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZCT01000006.1 Lacticaseibacillus zeae DSM 20178 = KCTC 3804 strain DSM 20178 Scaffold6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 110984 32 100.0 37 ................................ CATCATAGTTGAGCGTTTCTCCTGCGTCATAAGTTGC 111053 32 100.0 34 ................................ CTTGGCCTTTAACGTCCACTGAAACAGTGACTGT 111119 32 100.0 34 ................................ GGTTTTCTTTCCCCACAAATAATCGTGTAGGTTG 111185 32 100.0 36 ................................ GTCCTCCTCTGGTTGAGACACTGCTATTTGCTCCAT 111253 32 100.0 34 ................................ CTCTTGATAGTCACGCAGCTTAAACTTACCTTTT 111319 32 100.0 35 ................................ CCTTACTTTTTAGGCTTTGAAGATACCGATGTATT 111386 32 100.0 38 ................................ TTGTATCGAGATTACGCACGTGAGAAGATATAGCTAAC 111456 32 100.0 36 ................................ ATTCAATTGATAAAGCATCTTGCGCCGCTTAATTTC 111524 32 100.0 35 ................................ TCATACGACACAATCATGGGGCGCTCACCGCTGTT 111591 32 100.0 35 ................................ ATAATCAATACCATTAAGATAAGCATTGTTTTTCA 111658 32 100.0 37 ................................ ACTAAGGGTCGCTTAAACCGGCGCGTTAACTATGCAG 111727 32 100.0 34 ................................ TGGATTAGTTATACGGCCAGATGGTATCTATAAC 111793 32 100.0 35 ................................ CAATTGATGGCGAAACCTTAGCAAACAAAATAAAA 111860 32 100.0 35 ................................ TGGTGAACTTGGTGGTGTCCGATTCACCACAGCGG 111927 32 100.0 35 ................................ CTAATTCTGACGTCCAAATTAACTATTTACCAGGC 111994 32 96.9 36 .................C.............. AGTGACTTGTTTCTTCCCCCACGCAAGCGGCGTCCC 112062 32 100.0 35 ................................ ATTCAGATTGGTAATGGAAGACTTATAGCCTTCCA 112129 32 100.0 36 ................................ GAAGCGCCAAAACTAGAAACGGCCTTGCGGAATGGG 112197 32 100.0 36 ................................ CAGTAAGATATTCGCATGAAAATACTATCAGTATCG 112265 32 100.0 34 ................................ TAACGGTCGTTGCTCGTTTGGTTTGGCGTGACGG 112331 32 100.0 34 ................................ TAACAACCAGCAAAGTAGACCAGTTGGCCGTTTG 112397 32 100.0 35 ................................ AACATCGACATAAGCCGGCAAAACCTGACCAGCAA 112464 32 100.0 34 ................................ AAGATTCATGCTGATGTTGCTTCGGGTACAAATC 112530 32 100.0 34 ................................ CCGATAACGCTGACGATAAAACAGTAACATGGAA 112596 32 100.0 36 ................................ TTACCATTTACATGTAGGTATTACTAAAATGGACTT 112664 32 100.0 34 ................................ CAACACAGACGGGTCAAAACGTGTGCTATTGGTG 112730 32 96.9 34 ........................T....... CATAAAAGACGCGGTTAACTTGTGTATCGGCAAG 112796 32 100.0 36 ................................ ATAGATGGTTTTAGTTTTATAGTTACGCGTTTCCGT 112864 32 100.0 38 ................................ AGGACCTCTTCAAGAGCAAATGAAGAAAAACGGGGCTT 112934 32 100.0 35 ................................ GTGGAATCCAAAGCTGACTAAGGACGTTGAGATCG 113001 32 100.0 34 ................................ CTATCACGGGTATGCTGATGTTTGGACGTCAAGC 113067 32 100.0 34 ................................ ATTGCCCCAAAAGTGTCGTACAAAGGTCTGGCAA 113133 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 33 32 99.8 35 GTCGCAGTCCACGTGACTGCGTGAATTGAAAT # Left flank : CGACTATTAAAACAGGCTCAACAGTACGTCGTTCAAGTATTTGGTGATCAGCGTACTAGCGAAAACTTGGTTAAAAACGGTGTTGCACGTTTCGATGAGCATACGGGATTATGGATAGCCAGAGAAAGTCAATATGACGAAGATTTTGGATTGGATACAACGGACAAGGCCATGAACTATTTTGTATAATTAACAATCTTAAGTTGAAATTTAGATAACTTGATTTGTTGTCGAAGTTTCAAGGACAGGGTAATCTGAAGTGAGCGGTATTCAGTTGAATTGAAAACTGCTTTCTGGTGACAAGATGATTTCTAGCATCACTTTTTGTAATGCCTTCCCTTGGTGCGAATGGTGGGTAAACATATAAACCCGGGGAGATTCGCACCAGATTTATATCTGAAAGTACCGTGTTGACGTTTTATCTAGACTTTTTGATGTGTATAGTTAAGCACCAGCCGCAAGATGTTGTGATCTTTAGGCTTTTTGTGCAATATCTTGCG # Right flank : AA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGTCCACGTGACTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCAGTCCACGTGACTGCGTGAATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.40,-5.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //