Array 1 477324-480645 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCOY01000089.1 Salmonella enterica strain NGUA-26_S2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 477324 29 100.0 32 ............................. CGCCGTCACATCCTGATTTATCCAGTGTAGGG 477385 29 100.0 32 ............................. GCCAGTGATGAGGTATTGCGCACGTAACGCAT 477446 29 100.0 32 ............................. ATTGCGCGGGTCATTGTGGGAACTGAACGCCA 477507 29 100.0 32 ............................. GCTGCGCAGAACGAGAAGAAGTGATGGGCTGT 477568 29 100.0 32 ............................. ACATAACAGAAAAAATTAGAAGGGGACTTGTT 477629 29 100.0 32 ............................. GGTTCTGAAAGGGTTATTAAACCGTTTCTTAA 477690 29 100.0 32 ............................. GTGTAACCCAAATGCAGGGAATGAACCGCAGC 477751 29 100.0 32 ............................. GCTGTTAGCAAGCGCCGCCGCCTCTTCCAGAT 477812 29 100.0 32 ............................. GAATTGGCGTATCTGTGTCTTGCCAGACAGGG 477873 29 100.0 32 ............................. ATAGCGTTAAAATGACGCCCGACGTTGTGGTG 477934 29 100.0 32 ............................. GATCATCTCTTGATAAAGAAAAGCGCTTATTA 477995 29 100.0 32 ............................. TTAGTCAAAGGGGTAACTCCATTTGCCAACCT 478056 29 100.0 32 ............................. TTAGTAATTCATTTGGTAATGGTTATATGGGG 478117 29 100.0 32 ............................. CATTGAAATGTGCTGCTGGTTGTCAGGTAGAA 478178 29 100.0 32 ............................. CCGCGTGGCGAAGGTGTGCCGTGTCTGGTAGG 478239 29 100.0 32 ............................. TTCATATCGAAAAATGGCAATTCAGGAGAATA 478300 29 100.0 32 ............................. ATTTTTATGACTATTCTGATGAAATGATTAAG 478361 29 100.0 32 ............................. GCGTTAAAGAGGCTGCATATCGTTTCCTGAAA 478422 29 100.0 32 ............................. CACGCAGCTGCAAACGGACTAAGATAACAGCG 478483 29 100.0 32 ............................. ATTTTGAGTATGCTGATTCATCGTGGCGCCGC 478544 29 100.0 32 ............................. CCATATCTGGCGTTTATCTCACTTCGAAAATC 478605 29 100.0 32 ............................. GACGCCGTCGCCAACGGTGGGACGCTGTACGT 478666 29 100.0 32 ............................. TATCCGGCGCGTCGGAGTCGACACACGTAGCT 478727 29 100.0 32 ............................. GCCGGAGAGGTAGAGAGAGCGATCCTATTGCT 478788 29 100.0 32 ............................. TTGAATCGCCAGCTCGTAGCGGGCGATGATGC 478849 29 100.0 32 ............................. AAAATCTTTAACTATGTGCTGATGAACAGCGA 478910 29 100.0 32 ............................. GCTTAACAGCATTGCGCTGCCAAATCGTTCAG 478971 29 100.0 32 ............................. AACGATTAAACCTGCCAGTTATCGCTGAACAG 479032 29 100.0 32 ............................. GCGACGAATAAAATCGGCTTTGTATGTGCAGT 479093 29 100.0 32 ............................. TATCGTTTCTGAATTATTATATAAGCATAATG 479154 29 100.0 32 ............................. GAATATTTTAATGAAATAGCAAAAAAAAAGCC 479215 29 100.0 32 ............................. CAGGAAACCTGCCATTTCGAGAAGGCGATCAT 479276 29 100.0 32 ............................. CATAATGCCCGGTTCAAAATATCGCCCGTTAT 479337 29 100.0 32 ............................. GTGAATACGTGGTTATTTATACTGATACTAAT 479398 29 100.0 32 ............................. CATTTTCGCTTTACCTGGGGGAAGAGAGAGCC 479459 29 100.0 32 ............................. ACGGTACGGGCAGTTTTATTTGCGTGTGTAAT 479520 29 96.6 32 ...........A................. AGGCTTCAATCGAGGCAAGAATGAAAGCTGAA 479581 29 100.0 32 ............................. CGCGTCACAACACGAAAAAAACCAGCGTGGCG 479642 29 100.0 32 ............................. TCAACACCCTCAATAGATTTGATAGAGTCGAG 479703 29 100.0 32 ............................. TCAACACCCTCAATAGATTTGATAGAGTCGAG 479764 29 100.0 32 ............................. GCTGGCCGCATCGAGCGTGCGACCTCTCAATA 479825 29 100.0 33 ............................. GACAGCACTAACGCCCCACGCGGAACGCCAGTT 479887 29 100.0 32 ............................. ACCGTAACGGAGGGGAATACAGTAACCGGTGC 479948 29 100.0 32 ............................. AAAGCCTGGCAGCGGGCAAACTGTATATTAAC 480009 29 100.0 32 ............................. CCAGCGGCAACCCGATCACCATTGAAGAAGAC 480070 29 100.0 32 ............................. ATCACCGAGGCCTACCTAAACGGAAAAGGCGT 480131 29 100.0 32 ............................. CTTGTTTTATCCGGGGAGTCGTCAAGGACAAA 480192 29 100.0 32 ............................. GTTAACAATTGCATAACAGATGTGACGGACGG 480253 29 100.0 32 ............................. GCAGTATTTGCCGGTACTCCAGTAGAGGTTTC 480314 29 100.0 32 ............................. CTAACGCACTAAGGTCACAAGTTTTGCTAATG 480375 29 100.0 32 ............................. GCAAGCCACAGCGCGAAAGAGGTCTATTCCTG 480436 29 96.6 32 ...........A................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 480497 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 480558 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 480618 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================= ================== 55 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTAATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGCAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGTAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTAGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATTCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 496783-498154 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCOY01000089.1 Salmonella enterica strain NGUA-26_S2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 496783 29 100.0 32 ............................. CACCGCACGTCACTGTCGAACCCGGCAACCAG 496844 29 100.0 32 ............................. GCGCACAGTACCAGCTTGGCTTTCCGGGAGGT 496905 29 100.0 32 ............................. AGGTCATTTTAATTACATCGGTTCTTTCGGTG 496966 29 100.0 32 ............................. GACGCCCTCAAACACACGTATCTCGGCTACGA 497027 29 100.0 32 ............................. ACCTGGCGGAAACCTGCGGCCCGCTGATTTCG 497088 29 100.0 32 ............................. GCGCTAAACGGCTCGCCGATGAATATGATCTG 497149 29 100.0 32 ............................. TGGATACTTTAGATATCTCAATGTTTAAAATC 497210 29 100.0 32 ............................. TTTTACACGCTGGCTGAGGGCGCATCATATCC 497271 29 100.0 32 ............................. CCTCGCACCAAGACAGTCCGTAACGTTCCATC 497332 29 100.0 32 ............................. TTTAAACGAGGTGCTAAATAACCAACTTCATG 497393 29 100.0 32 ............................. GCAACTATGTTTAACGCGGCCAATAACGATTT 497454 29 100.0 32 ............................. GCGTGAGCACGGGCTCGCCGATCCGGCCTGGT 497515 29 100.0 32 ............................. CCTCGGGGATGTCCGGGAATGTCACAACATAG 497576 29 100.0 32 ............................. ACCTTTAAAAGCACGATTAAAGGTTTTATGCT 497637 29 100.0 32 ............................. CACCTGGCGCCAGAAATATTCATGATCATCGG 497698 29 100.0 32 ............................. GGGTAATTATGGCGACCCAGAGCATATTGCCC 497759 29 100.0 32 ............................. GCAATTAATAACAGAAAATAAATAGCGAGGAA 497820 29 100.0 32 ............................. AATAGCGTTCCTGACGTCTGAATTTCATATCC 497881 29 100.0 32 ............................. GACGTTTGATGGCTGGAAGGTTCTGTTTGAGA 497942 29 100.0 32 ............................. CAGTGAAATAAAACCAACGCACTGGGTATCCC 498003 29 96.6 32 .......T..................... CCCACCGCCCAGCCCGGATATAGTGAACTGGT 498064 29 100.0 32 ............................. AATAACTCCGTCGAGGTTGAGCGCGTTCTGCA 498125 29 96.6 0 ............T................ | A [498152] ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGGTTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCATCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //