Array 1 22745-22594 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JADDWU010000037.1 Leptospira borgpetersenii serovar Balcanica strain SN_Ce_RL16 NODE_37_length_31804_cov_76.908280, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
     22744	    29	  96.6	    32	..................A..........	AGATAGTTTGGTTTTTTTATCTGCGCCTTGAT	
     22683	    29	 100.0	    32	.............................	TTAGGGACTGTTTGGGGAATTGATGTTATTTT	
     22622	    29	  79.3	     0	......................GA.CGTA	|                               	
==========	======	======	======	=============================	================================	==================
         3	    29	  92.0	    32	CTTTTCCCCACATGCGTGGGGTTGAACCG	                                	       

# Left flank :   ATCCCGAATAATTGCGATCTCTTGTTTCGTTCGATGTGTCAATGTGATTCTTAGCCCGGTTCCGCATTTTTCAATGAAATTGATTTATAGATAGGAAAGACACTCAATAATTTATCGTAGAATGGAGAATCTTTTATATTTCAAAACGACAGTTCCCTGGGAGAACAACTCTGATGAAATATTTTAGATAATCCTGTTAGAGGTTTTTCACACTTTCAGTCGGTATTTAATATGGGCATCTTACTTTTCCTCTTTCTAATTTTGTTTTTAGTTACTTCCCTTTTTTCAGCAGAAAAAGTAAGCGTACCTTAGATGTTAACGCTAGTGGCAATCTTCAAACACAGGGTTGCGCGCCGTATATCAGCGGGACTTGATTACGGATAAGTTTCCTGAGAAGCATATGTTTTTAGTAAGGCGATTTGTCATCATAGATTGACTCGAACACAAAACCCAAAAATAGATTGCAAAAAATCCGGATTTATCCTATACAAGTTTTTAGC
# Right flank :  CGTAAGATCCATAAACACCAAAATGAGGTACGTAATTGTGGAACTCCCACGTTCAGAAGACCGACAACAGTGTTGCTACGATTGATCAGACTGACATTCGCGTGTTGTTTTGGTATACCGCAAATAGGAGTTGTTCTTAGTCTTAAAACAACTCAGCACAACGCTTCCTATGAAGCGCGTTTTGTGAATCAAATCTGCAAAGCGGGCTGCTTCAACACTGAACTAAAAAGTATTCCTTCTTTATCGTACATCTTCTCTAACGAATTAAATTATCTGATGAAATATTATTTTAACTTCGAGTTACCAGATTCGTCACCGCCCAAAGAAATCCGGATAACTCTCTGAAAATTGAGGTGATCATTAACTGAGGAGTTTTTCCTCTTAACTGTAGATTACGAAACTTCTTGTGTAACCTGAGAGAAGCTTTTTCCGCTAAAGAAACGACTAACGCAAGTCATCCCGATCTTCATGCAGTTACAATTTTACTTCCTGTTTCAGGA

# Questionable array : NO	 Score: 3.77
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CTTTTCCCCACATGCGTGGGGTTGAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [8,2] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 91% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.78,4.77   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//


Array 1 44-316 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JADDWU010000531.1 Leptospira borgpetersenii serovar Balcanica strain SN_Ce_RL16 NODE_532_length_343_cov_0.793233, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
        44	    29	 100.0	    32	.............................	CACAACAACGTCAATGGTGGAGTAGAGCATTC	
       105	    29	 100.0	    32	.............................	TGCCGATACCGGCAATTTTTCGGGCGGCGGTA	
       166	    29	 100.0	    32	.............................	TCTCAGGGCATTGAATGGGTTGCCAAAATCAA	
       227	    29	 100.0	    32	.............................	TACTCCTTCTAGTGCCGATGCCGGCAATTTTG	
       288	    29	 100.0	     0	.............................	|                               	
==========	======	======	======	=============================	================================	==================
         5	    29	 100.0	    32	CTGTTCCCCGCGCGAGCGGGGATAAACCG	                                	       

# Left flank :   GGGATAAACCGCGTTCAGAGGCGGTAACAGTGGTGGTCAGCAAC
# Right flank :  TTCGTTGGCGCGGCTGTCGAAAAATGC

# Questionable array : NO	 Score: 6.06
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CTGTTCCCCGCGCGAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [5,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-13.50,-12.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [31.7-18.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.14,0.41   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//