Array 1 36719-37766 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXQI01000006.1 Riemerella anatipestifer strain RCAD0422 Scaffold6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 36719 47 100.0 30 ............................................... CTAAAGTAGTGAGTTAATAATATGTTGATT 36796 47 100.0 30 ............................................... CTATCTTTGCCATTATGAATAAGCCGCTGC 36873 47 100.0 30 ............................................... CAGCGATAACGGCATCGTGGCGTGGTTTAG 36950 47 100.0 30 ............................................... ACACAACAAGTTGCGAACCATCACAAAGAT 37027 47 100.0 30 ............................................... AAGCGAGAGGCGATGATGATAGTTGGTATG 37104 47 100.0 30 ............................................... TATCCTAAACTCTTCCTCAATTTTAGCTTT 37181 47 100.0 30 ............................................... ACCTCACAGGTAACACTGGCGTGAATGTTA 37258 47 100.0 30 ............................................... TGATACAGCAAATAGTAGATGTAGCACAAG 37335 47 100.0 30 ............................................... AGGGGAGAGACGATGCAGATCACCGGAGCC 37412 47 100.0 30 ............................................... TGGCGCAGCGCAGTGCCGATGCAGCCAAGC 37489 47 100.0 30 ............................................... GACCTGCGCGTACCGCTGCTCGTCATCGGC 37566 47 100.0 30 ............................................... TATTTTGTTCTTGCACACATAAAATTTCTG 37643 47 100.0 30 ............................................... ACTACGGAGCTAACTAAATATAAACAGCTC 37720 47 91.5 0 .........T..............G..................T..T | ========== ====== ====== ====== =============================================== ============================== ================== 14 47 99.4 30 GTTGCGAACCATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Left flank : CTGTTTATAAATGTTATACTGGAGAAAAAAGACAAATATCTGTGCCTGAGTTTTATGAAGTTTAATCGTTTTAATGCTTATAGAGTTATGTGGGTTATGGTGTTATATGATTTACCAACAGAAACCAAAGCGATGAGAAAAGCAGCTCAACTTTTTAGAAAACGCTTGGAAGATGATGGGTTTAGTCTTTTCCAATTTTCCATTTATATACGGCATTGTCCTAGTCGAGAAAATGCGGAAGTACACATCAAAAGAGTAAAATCAATACTTCCCAAGCATGGCAAGGTAGCTATAATGAGCATTACAGATAAACAGTTTGGAGATATTGAAATTTTCTTTGCGAGAGCTAAAGAGGAACCAAAACCAACCTATCAGCAATTAGAACTTTTTTAGGAATAGAAAAAGACTTTACATCAAACAAAAATAGAGAAGAAATAGTAAAAAATCTAATCCTATAAAAACGCAAAACCCATTGAAAAACAATGGGTTTATTTTTTGAG # Right flank : TATTACTGTTTGTTATTGGTTTTATTTTTTAAGATATAAAACACGCTTCCAATTATGTAAACCGACACAATTAAATTAGATACTAAATTAAAAATCCCTATACTCCCAAAATCCATTACAATGTAGTAGGAATTATAAATGATATAAAAAATAGAAAATACAATAAGTATAAAATATAGTATAGAGTTTTTCATTTTTATAAATTGCAAGCTGTTACAAAGATAAAAAAAGAGCTACCTCCAAGAGGTAGCTCTACGTTTTTAAATTGAGATATTCAGTCTACTTTAAAGTAATATTGTCTATTTGTACAGTAGTAGTTACAGTAGTGTTACCTGCATATTCAAAAAAGATATAACCTTTTCCTGTAGCAGGAATTGCAAATTCGCCACTATCTACCCAATCGGCAGCATAGCCATTAGTATTTTCTTTTGAAAGAGTAAACTTAGAAGTAATATCTATTAGGTCGGTTTTATTTACAACTCCGCCAGGTGTATATTTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACCATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,4.87 Confidence: LOW] # Array family : II-C [Matched known repeat from this family], // Array 1 10378-8084 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXQI01000008.1 Riemerella anatipestifer strain RCAD0422 Scaffold8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================= ================== 10377 36 94.4 30 ...........T.....G.................. CCGAAAAGGGTAAGGCTATGCTATCAGAAA 10311 36 94.4 30 ...........T.....G.................. CATTCTGTAAACATCTTCAACAAAGATAGC 10245 36 94.4 31 ...........T.....G.................. CTAGGCGAGAATGTTTATAAGGAACAAGGTA 10178 35 86.1 79 .................-....C.T...T..A.... TCCGCTGAAACTACAACAAAGCGTGAGCTAACATGAGAGCAGTCCCAACAATTAATCGCTGGATGTTAGGGGTAGCGGA G,T [10144,10155] 10062 35 83.3 81 .......G.........-....TT....T..A.... TCCGCTGAAAATACAACAAAGCTCGTGAGCTAAAATGAGAGCAGTCCCAACCGAAAATGCGGTATTAAAAGAAGTACAACA G,C [10028,10037] 9944 35 86.1 81 .................-....CT....T..A.... TCTGCTGAAAACAACAACGAAGCCGTGAGCTAAACTGAGAGCAGTCCCAACTTAAAATGATAGAGGTTATCTACGGCACTA G,T [9910,9919] 9826 35 83.3 80 .....T...........-....TT....T..A.... TCCATTGAAAATACAACAAAGCTGTGAGCTAAACTGAGAGCAGTCCCAACTTCGGCATCTTTCAAAATAGGCTGGAATGT G,C [9792,9801] 9709 35 83.3 80 .................-....C.T...T..A...A CTCCGCTGAAACTACAACGAAGCTGTGAGTAAACTGAGAGCAGTCCCAACCAGATGTAACGACAGGAAAAAAAGAAATAA T [9687] 9593 35 86.1 80 .................-....TT....T..A.... TCCGCTGAAAATACAACGAAGCTGTGAGCTAAAATGAGAGCAGTCCCAACCCTCAAACTTCAACTTGTTGCTGGTAACTC G,C [9559,9568] 9476 35 86.1 80 .................-....TT....T..A.... TCCGCTGAAAATACAACAAAGCTGTGAGCTAAAATGAGAGCAATCCCAACGCATTATCGTACTCTGTAACACGAACGGCA G,C [9442,9451] 9359 35 86.1 80 .................-....TT....T..A.... TCCGCTGAAAATATAACGAAGCTGTGAGCTAAAATGAGAGCAGTCCCAACGATTGTCGTTTTAAGTGTGATACCCACAAG G,C [9325,9334] 9242 36 100.0 30 .................................... ACCCGGCTCTTCCAAACCCATTTCTGCAAG 9176 36 100.0 30 .................................... CACTAGTCTATTTACCTCTATACAAGTGGG 9110 36 100.0 30 .................................... GCTTCCATAGGAATTTCCTGAGTTACCACT 9044 36 100.0 30 .................................... CAAAGATGATATGTTAAAAATGAATATTCA 8978 36 100.0 30 .................................... GAAGTAAGGGTAGCTGATGAGAGCCATATC 8912 36 100.0 30 .................................... CTTTTTAGATGAAAACCGCTAGAACTTTGT 8846 36 100.0 30 .................................... ATAACGGTCATTGTGATGGTGGAGCTGAAT 8780 36 100.0 31 .................................... CCCATAAACTCGGCAAGATTTGGAATGATGA 8713 36 100.0 30 .................................... AATTTTCTGGAAGTTCAAAGTATAAGGCTT 8647 36 100.0 30 .................................... TTAGGCGTAAACATATACAACGAAGCTAAT 8581 36 100.0 30 .................................... TTAATGCTTTGCCGTCATCTTTGTAAGTTA 8515 36 100.0 30 .................................... TTGTTCTTCTAGGTCTAATATCTTTTGCTG 8449 36 100.0 30 .................................... TGAAACTAAATGTAAGTATGTTGGTTGAGA 8383 36 100.0 30 .................................... GTGAGGTTTGATTTAGATAATATTCATAGT 8317 36 100.0 30 .................................... AAAATCAAATAATTCATACTGCTGTTTGGA 8251 36 100.0 30 .................................... CTTTCAGAGATGGGACAATGGTTTGTGGAA 8185 36 100.0 30 .................................... TGCTGAAATAGAAAGATTAGGTGTTAATGT 8119 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================================================= ================== 29 36 95.3 44 GTTGTGAATACCCTTCAAAATGAGAGCAGTCCCAAC # Left flank : AAGGCACTTATATTAAAATAGACGGCAATGACCCTAAAAATGGTATCGTCTTTAAAAACTTAGACAATCAAAATGAGGTAAAGCTCTCAGCAGAGCATATTGTGCTTAATGAGCCGTCAAGGTTACTCATTCTCGTTCCTACAGATTTAGAAGCAGGGAACTATGAACTCAGCATCACCACGCAAAGCAGTAAAGGCACTACCTTACTGAAAGAACCCCGCACCGAAACACTAAGCACGCCTATTACTATTGTGTAGTGTGTTTTTGGTACTTCTAAATAAAGACCGCCCTTCCTTACATTAAGGAAGGGCAGTCGCTTTATAAGAGGAAGCTACTTCACTGCCTAAGGCGAAGCCTCTTCTCTCGGTAAGACGAAGTCGGTTCCCTCGTACGAGGGAACCGACTTCGTCTGTATTAAGGAAGTGAGGAATTTTCTGTAATAGAATAAATAATATAGCAAAAATCCCTGCTCTGCAGGGATTTTTTTTATGCCCTTAGGT # Right flank : TGGTACTCCAGTTAGTTTTTCAGCTTCTGCGTTGTGAATACCCTTCAAATGCTGTGCATTATCGTTATGATAGGGTATTGTCTTTTTTGGGGTGCTTGTTTTATCTCGGTGTTTCAAAGAACGCTTTTCTTTACAACGCTCTTAAATCGCGTTGTTCTATTTTTAGGCATTGCCTAATGCTTTTGCTCAACTCCTGATGCAGCTCCTTCATTCTGGTAGCCACCTCTTCGTTTTTTAGTCGGAACTCCGCCTCGGTGCTGTTTTGTTCTGCAAGTAGGAGCTTATAAACGATACTACGGTACTCAAAAAACTTATCAGCAATTTCCTTAGACAAGAAGAGCCCACAGCCCTCCCCATAAAATAGTTCTGGGAGTTCCCTTAGAAAGGCTTGGGCATTGGCTCGGCTAATATAATGAATTTTATGCTTTTGCCCTTTGGAAACTTCCCATTTTAAGAGGTTTTTGGGGTTGTCTTGGTCGGTCATATACGCCAGCAGACGG # Questionable array : NO Score: 5.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:-0.94, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATACCCTTCAAAATGAGAGCAGTCCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-43] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //