Array 1 97321-95657 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMNL01000098.1 Salmonella enterica subsp. enterica serovar Heidelberg str. 32507 SEEH2507_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 97320 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 97259 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 97198 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 97137 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 97070 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 97009 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 96948 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 96887 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 96826 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 96765 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 96704 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 96643 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 96582 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 96521 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 96460 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 96399 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 96338 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 96277 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 96216 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 96113 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 96052 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 95991 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 95930 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 95869 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 95808 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 95747 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 95686 29 96.6 0 A............................ | A [95659] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 114701-113576 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMNL01000098.1 Salmonella enterica subsp. enterica serovar Heidelberg str. 32507 SEEH2507_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 114700 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 114639 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 114578 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 114517 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 114456 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 114395 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 114334 29 100.0 31 ............................. AAAAACAGAAGAACGGCAAGCGGCACCTCAA 114274 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 114213 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 114152 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 114091 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 114030 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 113969 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 113908 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 113847 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 113786 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 113725 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 113664 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 113603 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTAACCCGAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGCGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //