Array 1 499228-499501 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011996.1 Porphyromonas gingivalis AJW4 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 499228 46 100.0 30 .............................................. CCCGACGGAAATCAACTTTCCGGAGCTGAA 499304 46 100.0 30 .............................................. AGGTGATTCATTTTCTTTGTTGTTCAGTCC 499380 46 100.0 30 .............................................. ACAGCGTGAAGTCGCCGGAGAGGCTGATTG 499456 46 93.5 0 .................C.T...............T.......... | ========== ====== ====== ====== ============================================== ============================== ================== 4 46 98.4 30 GCTGTGCGTTGCAACAAAAATACTAAATCTGAAAGCTATTCCCAGT # Left flank : TTTAGTGTTGAGTTGTTTATATTGGTCAAAAGCCATTTGCATGGCATCGTAAGCAATTGGATAATCGGTTGAAACTGCATTGCTAATTGATCCACTTGCCAAAATGTGAGCAATTCTTTTTCATCTACGTGTAAAAAACAAGCAAGTTGTAAAACTTGTTCTTTCTTCGCTCGGCGTTCTCCTCGTTCAATTTTACTATACAAACCTGAATCAATTTCAAGAACAGCAGACATTTGCCGTTGTCGTAAATCGTTCTTTACTCGTAGTTGTTTAAGTCTATTCGCGAATAACATCATAACATTTTATGTCTTGACAAATAATGTACAAAATTACAACTTTTTCTTAAGATAACGAAATAATTTGGCATGTTTTTCACTAAAAAAATGCACAAATAAGAGCAAAAAAGAGAAAGATAATGTTTTTGCTAAAATATTATTTTGTTGATATTCAGTTGATTATTTGTTTTTGATTTCTTTTGTTTTCGGTGTTTATTTGGTTGT # Right flank : TAGGCCAGCTGGGGTGTGACGGGGTATAACGTCTATGACTACGAAAAAGACGGGAAAACTTACAGAGTCGGGTTCGAGGTAATAGAGAAAGAGGCTGCGAGGTGGAAGCAGCCGTATTATGTAAAAAAGAAAAACTGATCAGGGTCAGTTACGTGCTAAAAAAATCGCCCGAATTCGCGTCCCTAATCAGCTTTCTGTACTGCAAATATAAACAAAGTTTCTGAAGCTGCGTTGCAACAACATTACTAAATCTGAAAGCTATTCCCTGTGAAAAAAGGGAGACCACGAAAATAATAATCTGCTCAAAAATCATGCGCCAAAAAAGTTTTCAACAACGAAGACGAGTTTGGAACGATTCCAAATAAGTATCTGTAGAGAGGAGAAAAGCAAGGTAAAAGTGGAGGGAAAAGGAACTGCCATAGATCTAAATTCCACTTAAAACAAGCCGTACAACGATCTGTATATAAAGCGTTTTCAATTTGTATACAAATCGTTTTCAT # Questionable array : NO Score: 2.78 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTGCGTTGCAACAAAAATACTAAATCTGAAAGCTATTCCCAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.87%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 2 1737627-1738389 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011996.1 Porphyromonas gingivalis AJW4 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1737627 36 100.0 31 .................................... CGCTCAAAACGACTCAAGAAAAACAAATGAG 1737694 36 100.0 30 .................................... ACGGGAAGAAGAAAGGGCCATCAGGGAGAG 1737760 36 100.0 30 .................................... TTTAGGCATAAGTAATAAGGAGGGCGTACC 1737826 36 100.0 30 .................................... TTTACCAAAATTAATAAGACAATTAAAAGA 1737892 36 100.0 30 .................................... ATATTTCAAATAAGCACGATATAATGGAGC 1737958 36 100.0 30 .................................... ACCCCTTCCTCATTAATCATACCTTGTTCT 1738024 36 100.0 30 .................................... AAGGTGGAAAGTGTTGAAAACTACTATGGA 1738090 36 100.0 30 .................................... AGCCACGGGAATCGGAACCACATTGGGGAA 1738156 36 100.0 30 .................................... TAAAAGATGATACTGAAACCCTCTCGATAG 1738222 36 100.0 30 .................................... AAATGTCTATTGTGTTCGCTCAAGTATTCA 1738288 36 100.0 30 .................................... TATCTGCCTGAAAACGTCATGCCTTGAAAG 1738354 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 12 36 100.0 31 GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Left flank : GTTTTCATTTTGTATATAAATCATTTTTAATTTATATATAAATCGATTGCGATAAATATATAGATTGTAAGCCCGATTTGATATAAATCGGGCAGCTCAAAAGGCCTTTAGCGGAGGTATAAATAAAGAGGCACCCACCGAGTTCCTGCAGGAACTCGGTGGGTGCCTCATCTATTTCGAAGGGGTACGAAACGGCTCTCAAGCTCTACCGCTCATACAGCAGGCTTGTATCAGCCATACGCAACGCCGGCATATAACCACACAGGCCGAACAAAACCGGCCGAATAAGAATGCAGGGAAGAGAAGGATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAGAAAGGGAAAGCACTCCCCGGTACAAATTCACCGAAGAGGGGAGCAGCTTGTCCGCCTGCAAATGTAGCGAAAAAGCCCCAACGCGAAAGAATCCCCACACTACTGCACATTCCAACGCCCAAGCCACCAATCAAGAATCAT # Right flank : CCTACCCCCATCGAATTTGAAACCGATTGAGAAGTCATCATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCACTGCAAGCCGGCGAAAAACAGTCTGTCATCATCATTTTAGTGGGATTTTAGGATTGAAAAAATGACTCTCTACGGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTGTGCTCCTGCCGGTTCGCACTCAAAAGTTCAACGTTCGCTTCTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATGCTGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAATCCTCTCATCCGAGTTCTGCCTCTCCGAAAGCAAAAGACCGTAAACGATACTCCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAATACCGTTCCCATTCTTATAAAATTCGTCCGTCAGTTCGGACAGGAATCCACGGATGCAGGCCGGCCTGAAATAATAGGTTTTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //