Array 1 59934-60629 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS999970.1 Treponema pectinovorum strain Marseille-1-CSURP6641, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 59934 36 88.9 30 A..TT.A............................. CAACAGCAAGGGCAAAGGTGGGCAGTTGGA 60000 36 97.2 30 ............................C....... CAGACATAACATTGCCGTGTTTATGAACCA 60066 36 97.2 30 .......A............................ CATAGCATTTGATGATTCTTCAACCGTAGG 60132 36 100.0 30 .................................... TTAGACGCAATTTGCGTAAACAATGAACGG 60198 36 100.0 30 .................................... AGCCAAAACGACGCCCATAGTGTCAACGCC 60264 36 100.0 30 .................................... AAATAAATAAGCGTTATCGCAAACTACCTT 60330 36 97.2 30 ................G................... AAGTTGCTTTCTCTTTCTCTGTAATAGGTC 60396 36 100.0 30 .................................... TCAAGGCTGTACAATGTTCTTTTACTTTTA 60462 36 100.0 30 .................................... CTTCTCATATAGTAGTATGGTCTAATTGCT 60528 36 100.0 30 .................................... GTTTCAGACAGCCAGACGGCTCGTACTTTC 60594 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 98.2 30 GTTGCAGGTTGACCAGAAAAATTAATCAGTTAAAAT # Left flank : TTCCCTTGCGCTATCTCGTGTTATTCCTGTCTGCTTTGTAAAATCTCGCGCGGCGACCTGCCATTCACCTATTTTCTGCCTTGCTCTTGTGTTGTCTACCCCTACCGCTTCCTGCGTTAATGCTTGCCGTTTGTATCGCCTTATGTTTCGTTCTATGCCTCTAAGTTTTTGCTCACCGTCATAGTATGATAGTTCCTCGCCGTTAAACTCCATTTTCTCGCTTGCTATCTCGTCTAGGTCGTCCTGCGTGTAATGCTCTTTTGTTCCCTCAAAGTAGGGATAAAATGAATGTCGGCAGTTTATTCCGCACAATCCTGTTGTACTCCCCAGTCCGCAAATGCTGTATAATCCTTTCTTTGTGAAAATCTTCCTTTGCCATTCTTCGTGTTCTGGTCTTGAGCCGATATGAGCGGAAACTTCAAACTTTTCAACTCCCAATTCGTCCGCATTGTTCAATATCTGGTTCGCTGCAGTTTGGTTTATCGATGTGAGAATAAAAT # Right flank : TCCGTCTGATGTATTTTCTTTTTTTGTATGGAAATACAACTCATCAGGCGGATTTTTTTTGTGCGATTATCAGAATAAAAGGAGTTGTTCGTTCTGCTTTTTTTGTTGTTTTTCTCTTGAATGATAACTGATAATATTTCCATATTGATGATCCGTTATCGTTAGAATATCCACTTTTCCCTGCGCAGGCAAGTTTTTTTGTATCATTTTATAGTATTTTTCACAGGCATCCTTCCCAGAAAATAGTTTTGTATAAATTGAATATTGAACCATGGAAAATCCGTTATCTAATAAAAAATTCCTAAAAGCAGTCGCTGCCTTTTGATCAGATTTTTCAACAACAGGTAAATCAAAAAAAAACTAAAATCCACATAAGCTCATACCTACTCAATAATGGTAATTCCATTTAAATTGTTCTCCCACTCTGGCAGTTCAATAACAGGTTTCCCTTCTTCTAATGCATGAACATAAGAAGCCACTAGATATTGCATACTCTGGCA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGGTTGACCAGAAAAATTAATCAGTTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTGCAGGTTGACCAGAAAAATTAATCAGGTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.30,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 25123-23638 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS999972.1 Treponema pectinovorum strain Marseille-1-CSURP6641, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 25122 36 88.9 30 A..TT.A............................. GACTTCATATAGTACCAGTGAACAACTATC 25056 36 100.0 30 .................................... CGTCATCATTAACCTGATTACCACTGGCGT 24990 36 100.0 30 .................................... AAAATTTCATCCACTCCTGCCATTGCTAGA 24924 36 100.0 30 .................................... TTTACATTGTGCTTTGTGCCTTGAATGATT 24858 36 100.0 31 .................................... GGTAAAAAACATTCGATAGCAAGTTTTCTTG 24791 36 100.0 30 .................................... AACTTTGAACCAATGGCAAAGTATCCAAAG 24725 36 100.0 30 .................................... ACATTTGCGGAAAGGATGTTGCCAGTGCTT 24659 36 100.0 30 .................................... GAGCGCGCGTGTACACAATGGTGAAACTGT 24593 36 100.0 30 .................................... TGACACCACAATCGATAACACAAGTCGAGC 24527 36 100.0 30 .................................... CCAAGCGGTAACACACGTGACAAACTGGGT 24461 36 100.0 30 .................................... TGTTGACCTTGTGGATAATAATAGCCTTGT 24395 36 100.0 30 .................................... ATATTTCATTTTTAATGAAACACATTTTTG 24329 36 100.0 30 .................................... TGCTGCTGCGCATTTGCAGCACATACGGAG 24263 36 100.0 30 .................................... TTTCTTCAGCAACAAACCTTTTTTTCTGCT 24197 36 100.0 30 .................................... CTAGATACACTTTGATAAAGGCGGTTACAG 24131 36 100.0 30 .................................... TTTTGCAAATATTCGTGGCGAACTTGCAGT 24065 36 100.0 30 .................................... TTTTGAACTTTAGATAGTTTTATTAGACTT 23999 36 100.0 30 .................................... TCTTTTTCACTCCTAAAACAACCAAAGTCA 23933 36 100.0 30 .................................... GACCAGAATATTGGTCATATTATTTTGACT 23867 36 100.0 29 .................................... TTTTCCGGTGGAGCCCGGACTTTCCTCAC 23802 36 100.0 30 .................................... GATAAACCGCACTATCTGAATAAAAATATT 23736 36 100.0 27 .................................... AATTATTGGTGTAAGGCTTCCAATGTC 23673 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 23 36 99.5 30 GTTGCAGGTTGACCAGAAAAATTAATCAGTTAAAAT # Left flank : TTCCCTTGCGCTGTTTCGTGCTATTCCTGTCTGCTTTGTAAAATCTCGTGCGGCTGCCTGCCATTCGCTTATTTTCTGCCTTGCTCTTGTGTTGTCTACCCCTGCCGCTTCCTGCGTTAATGCTTGCCGTTTATATCGACTTATGTTTCTTTCTATGCCTCTTAGGTGTTGTTCTCCTTCGTAGCGCGTCAGGCTCTCGCCGTTAAACTCTACTTTTTCGTTTGCTAAATTGTCTAAATCGTCTTGGCTGTAATGCTCTTTTGTTCCCTCAAAGTAGGGATAAAATGAATGGCGGCAGTTTATTCCGCACAATCCTGTCGTACTCCCCAGTCCGCAAATGCTGTACAATCCTTTCTTTGTGAAAATCTTCCCTTGCCATTGTTCGTGTTCTGGTCTTGAGCCGATATGTGCAGAAACTTCAAACTTTTCAACTCCCAATTCTTCAGCATTATTTAATGTCTGGTTTGCTGCCGTTTGGTTTATCGATGTGAGGATAAAAT # Right flank : CCGTCTGATGTATTTTCTTCTGTTGTATGGAAATACAGTGCATCAGGCGGATTTTTTTTGTGCGATTATCAGAATAAAAGGAGTTGTTCGTTCTGCTTTTTTTGTTGTTTTTCTCTTGAATGATAACTGATAATATTTCCATATTGATGATCCGTTATCGTTAGAATATCCACTTTTCCCTGCGCAGGCAAGTTTTTTTGTATCATTTTATAGTATTTTTCACAGGCATCCTTCCCAGAAAATAGTTTTGTATAAATTGAATATTGAACCATGGAAAATCCGTTATCTAATAAAAAATTCCTAAAAGCAGTCGCTGCCTTTTGATCAGATTTTTCAACAACAGGTAAATCAAAAAAAACTAAAATCCACATAAGCTCATACCTACTCAATAATGGTAATTCCATTTAAATTGTCCTCCCATTCTGGCAGTTCAATAACAGGTTTCCCTTCTTCTAATGCATGAACATAAGAAGCCACTAGATATTGCATACTCTGGCAAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGGTTGACCAGAAAAATTAATCAGTTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTGCAGGTTGACCAGAAAAATTAATCAGGTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.40,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //