Array 1 89144-88054 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZBZ010000005.1 Streptococcus salivarius strain E31 5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 89143 36 100.0 30 .................................... CAAAGCAGGTAACACCGATATACGTAACCA 89077 36 100.0 30 .................................... AAACAAAGGAGTTTTAAACATGAGTTTGAA 89011 36 100.0 30 .................................... AATCGAATACAAGAGAATCGATACAGTTCT 88945 36 100.0 30 .................................... TAAAATGTGACAAGTAATATCATAATCAGC 88879 36 100.0 30 .................................... CACAGCCAGAAGATGAAGTGTATGGCTACT 88813 36 100.0 30 .................................... ATCTGAGAGGTATTTCTGATTGGTATGATC 88747 36 100.0 30 .................................... TATTGACGGCTCCATCTGTTGTCCACGTCG 88681 36 100.0 29 .................................... TTTTTTTATTCCTTCCCTCTTTTCCCCTC 88616 36 100.0 30 .................................... TCTATAAATGGTTTGATGATGTAAAAAATG 88550 36 100.0 30 .................................... CTGATGTCTTCCCTTCGTCTTGACTTGGCG 88484 36 100.0 30 .................................... ACTGGTCTATTCGTTTTAAAAACCGTGCAT 88418 36 100.0 30 .................................... ACAAGGGCAATCCTAAAGTCGAATGGATGA 88352 36 100.0 29 .................................... GAGGTGATAATAATTGCCGATATTTAATT 88287 36 100.0 30 .................................... CCACTAATGCGGACGGCAGAAAGAACGGTG 88221 36 100.0 30 .................................... CTGAGTTGTTACCGATAGAACCGACGCCCT 88155 36 100.0 30 .................................... CGCAGTTAGTTGAGAATGACACGACATTCC 88089 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.7 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATAGTTTTGTCTCAGAGGAATCTTATGATAGTTTTTATAAGAAAATTGGTCAGCTAGCCCAAAAGTATCCAAACCTAAACTTTATTTTGTTTCCTAGTGACCAAGGATATCTAAAGATTGACGAGGAAAGTAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTACGATGTTGAGTTTATGTATGAAAGGGTAAAGAAACATTATCCAAGTAATAATTTTCCGACGCGAGAAGGTTTTAGGATGTCCTTAGAGACTGTGACGCCTTATTTGTTAACAAAAATGACGAGACAACCTAGTCTCTCACTCGTTGATTCAGTAATTTTGAATATCTTAAATCAGTTGTTTCACTTTAACTATTGTATAAGATATTCTCAGACACCTGATGAGGAGCTATTACATAGATATTTAAAAAGTAAGAATTGACAAGTACAGTGATTGATTCTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTGATTCAACTTAAAAAGCCAGTTCAACTGAACTTGGCTTTTTAAAATACACGATATACATAAGGATTGTCAGGCTGTCCGACCTCTTTGACCTCAGTCAAATTAAGGATAGGCAGGCTCTGTTTGAGATTTTGATAATAATCCACAGTGATGGTACCAGTGACTTTCACCCAAGTATTGTCCTTGAAGGTTTGGTCACTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATTCCGAAACGGAAGATGAACTGATAACCCTTGGTTTGTGGGTCATTGTAGACAAAACCGGTATAGGTGACCTTCTTGCCCACAAAATCGTTAGGATAGAGGTAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCGAGCTCTCTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCTGGCTTCAAGTACTGAATAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 50871-52797 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZBZ010000003.1 Streptococcus salivarius strain E31 3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 50871 36 100.0 37 .................................... TTCCCATACCCGTGTAGTATAGGTACAACGCTAAACT 50944 36 100.0 38 .................................... TTTTTTTATTCTTAACTCTTGTGTAAAAACTACAGTCT 51018 36 100.0 36 .................................... TGTTTCTGAATCATTATCCCAGATAGAGTTATACAA 51090 36 100.0 33 .................................... ATTTTATTAGTTATTGATATTCTTTTATATTCT 51159 36 97.2 37 .............T...................... TTTGCCCAGGTCCTCAATATGAGACAATTGTGCTTTC 51232 36 97.2 38 .............C...................... AGAGCATCTTTAGTGAGTGTAATGAGTTGCTTGTTAGC 51306 36 91.7 38 ............C............A......T... TAAAACTTGTCGCCATCGATACGTTTGTTAATGACCTT 51380 36 91.7 36 .........A...........CA............. TTCATTATTATTGCACTAATAATCCACATACCTTGA 51452 36 94.4 36 .......G.....T...................... AGATTCTTTCTTTAAATCAGAAATGAAATCATCTAC 51524 35 91.7 38 .............T.......C..-........... GGAGTCGAGATCACAACATCACTTGGCTTAGTGTGATC 51597 36 91.7 36 ........A....C.......C.............. GTTAGCAAATTTCATTTTGCTACCTCCTGAAAAACA 51669 36 91.7 36 .............T.......C..........T... AAACGACCAGACAAAACGACATTATTCATAAGATTT 51741 36 88.9 36 .G...........TC.................T... TCGTTGTACACCTCATCTCCAACTGGCTGTCGTTGT 51813 36 91.7 38 .............TC.................T... TCATATCTACTCCTGAGTGTTCAATTTCTTCTTCGTCT 51887 36 97.2 38 .............T...................... CGTCCAAATCGATTATCAATCTTCATCATTTTAGGTTG 51961 36 88.9 35 .............T......A....A......T... AATGATGACGCTACTAACCATCCAATCAATACCAT 52032 36 86.1 38 .T.....G.....C..T....G.............. CAAGTATCAGAAAGGACAGCGTTGTTCAAAACTTGACG 52106 36 88.9 37 .......G.....TC......C.............. CTATTTGAATCTGTTTCTAGTTTTCCATTCAATGAAG 52179 36 97.2 39 .....................C.............. AGTTTTATAGGCATAGATATATGATCGTCTGTTTTGACC 52254 36 88.9 38 A..............G.....C...A.......... ACATATAAGATAATAGCTCTTAATAATTGCCTTTGTTT 52328 36 94.4 36 .............CC..................... TAAAATACTGACACGCCTTGTTCTTCCCAACTAGAA 52400 36 94.4 38 .............T.......C.............. CACTAATAAACGCTTCTTGTCGTTTGAGCTCTTCGGCT 52474 36 88.9 39 .............CC......C.............T TCATAGCTTCATAAACCGTCCACCAGAATTTATCAGTTT 52549 36 97.2 37 .............T...................... TCAGTATTAGTGAAAGATATACTTCATTCAGTTACGC 52622 35 88.9 35 .............T..........-.......T..T ACTCTTTTATTTTTTACGGTATACATAATTTTCCT 52692 35 80.6 35 ....C...G....-C......CA.........T... CATACGGAGCTACCTGACGACCCTCAGCATAATCT 52762 36 83.3 0 ..............................TTTTTT | ========== ====== ====== ====== ==================================== ======================================= ================== 27 36 92.7 37 GATATAAACCTATATACCTCGAGAGGGGACGGAAAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTTTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAATCTCAGTGAAGAAGAACGTGACTTTGCGAGACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCCAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCGACCTGTCAAGAAATGACTATCAGTCTCTCCTTAAGGATATCGAGAGTTTCTACAAGGCTGATGAAGAAGACAGTATAATCGTATATGTGACAACCAAAGAAGAGGTGACCAGTTTTAGTCCCTACAATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGGCCTGCAATCATATGGTACAATAGAGATAGTGTTTCCAGTGGGTCCTACATCTTGTGTCGCTAGCAGCTGTCTAGTGCACAAGATATGGG # Right flank : TGAAAATTTTGAAAATAGTCTTGACACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCCAATGAGGTGAAAAGTACTTTCAGCTTTTGGGGTTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTAAAATTTCATGGCTTCTTGATGGAGCAATTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGTCGTACATCTGCTCACAGATGACCTCGAGGATAAAGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGACCTGCCTAAGCTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGAGCAGATAAACTCTTAGAGATTTTCAATAGTGAGGACAATCAAACCTATTTTTCAATCATTTTTGAG # Questionable array : NO Score: 5.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.20, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTATATACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [10-35] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //