Array 1 653799-656144 **** Predicted by CRISPRDetect 2.4 *** >NC_019753.1 Crinalium epipsammum PCC 9333, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 653799 36 100.0 42 .................................... ATTTTTTATCCAGATTTTTCCCCAAATTTGCAATAATTGCTA 653877 36 100.0 41 .................................... TTCTGTAGAGTTATTGTATAAGAACCCCACGTAGAAACGAG 653954 36 100.0 39 .................................... AGTCTCTTCTCCGGGAGGTTGAGTTCCTGGAGCTGTCTG 654029 36 100.0 43 .................................... CATTAATAGTATATTACCTTTGCACGTTTTGCATTTCCAGAAT 654108 36 100.0 39 .................................... CTTGTAATCGCAAACTTTAATCCTTTCATTTTTTTTCTC 654183 36 100.0 46 .................................... TTCATTGGTTTTGCCAGGATGATTTTTAGCAGCGCCAAAATCGAAA 654265 36 100.0 33 .................................... CTGGAGCTGGTTGTTGAACATTCTCACTATCTT 654334 36 100.0 38 .................................... GCCATTACATGGACCTGATCCAACTTGTAATTGTGAGT 654408 36 100.0 34 .................................... AAAAAATTCGAGTCGATGGGAGCATACAGTTTAC 654478 36 100.0 40 .................................... ATTCATGGCTTTCTGTAACTGAATCACTAATACAGCGACA 654554 36 100.0 41 .................................... TTAAATCTCCGATCTTTTGACGTGTGCCAATTACAAAATTG 654631 36 100.0 46 .................................... GAAAAGTTGTACCATGCACTATGGTACAACGAAATTGGACTAGAGA 654713 36 100.0 42 .................................... TTTCCCAATAGTCCGACAACTTTAATGAGTCAGCAGGATATT 654791 36 100.0 41 .................................... AAATTATCTATGCAACAGACCTCTTTACGAAGTTTTTTTTT 654868 36 100.0 37 .................................... TTCTTAATATATAGATTCTTTCACCGCCAGTTATTAC 654941 36 100.0 36 .................................... TATCTTTCTCCCAACTTCCGTGATCATGATTAGCAA 655013 36 100.0 33 .................................... CAAAGCATCCCACATAACTTCTTTCAACTGTTC 655082 36 100.0 37 .................................... CTTGTTCAGCATTTCTTGATACGTATTTACCAGTCCC 655155 36 100.0 40 .................................... AATACTCGAACAAATTTACAAGGAATAGTGAACGGTACTA 655231 36 100.0 37 .................................... CTCAACTTTCTTACAGGTTACCGTTAAATCAGCTGAC 655304 36 100.0 34 .................................... GCTACTCCCTCTTCATAGGACTTAACATCCTTTT 655374 36 100.0 41 .................................... AAATCCTTGCGCTGACTTTGACATTTGAACTTCTCCCCCAC 655451 36 100.0 39 .................................... AGATTTTGTTGTACCACCTTTATCAACCCAGTTTACCCA 655526 36 100.0 31 .................................... GCTTTGGAAGGATGTTCACTCATTAGTACTA Deletion [655593] 655593 36 100.0 41 .................................... ATTCTTCTGATTCCTTATTTAAATCTTCAGCTTTATTTTCT 655670 36 100.0 38 .................................... CTTAGGAAAGGATCTTCTTGTTCATAGATATTTAACAA 655744 36 100.0 39 .................................... TGCTGTAGTGACAGTCCATTGGTTTAAACTCAGATGATT 655819 36 100.0 37 .................................... GTAGGATCTGCAACAGCATTAGCGGGAGGATGTCAAT 655892 36 100.0 33 .................................... TTTTTTCCTTATTTGCTTCTAAAAATAAGTAAC 655961 36 100.0 37 .................................... GTGCTATGAGTGCTAGGTACAGTGACAAAATGTTTGT 656034 36 100.0 39 .................................... CAGCAACTCCCTCTTCGTAGGACTTAACGTCCTTTTGAA 656109 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================== ================== 32 36 100.0 39 CTTCCACTAACCATTTCCCCGTAAGGGGACGGAAAC # Left flank : GATTACAAATTGTTGCGCTCGCGCTGCGAGTTGTTGACTTTTGCACGCTCAGGACTGTAAAGTGACAAGCTTATAGGCTAAATTTTATTCCTATAGTACCTTGACAAAAAAATAATAATGTCTTTTCAATCGTAGCTGAGTTTCCTAGCTCTACGAGTAAGTTGATACTAATGCTATCTTGCCACTAGAGGAGCAGCATTGGTGGCGGTGTGTCGATGGCTGTAATGAAGGATGCACCATTAGAATAAACTTGCTGAAAACCTGAGAATGTATAGCTTTTAAGGCATTCTTTGGGCTGTCAGTAGATGTATCGACGCACCTCGACAGATCTCTAAACTGACGTTTTTTTCGTCGAGATGTGTCGATACCTGACTAGATAAGAGTTTTGGGTAATTACAATTTACTTATTGCAAAAATTTCCCTGCTTATTGACTCTTTAAAAAGAGGTGCGTCGATTTACAGCCTGAAACTCACTCCCAGGAAGGCTCCCTCAGCGAACT # Right flank : CAAAATTAACTACCCCAGCGCCAGCGAGAATTCCTATTAGACATCTCCAAAAAACAAAATAAAAAATCCGTAAAGATGATAAAATTGTATTTTTGCACTGCTGGCCATGAGTTCTGTACTGGAATACATCACATCTAATCCTCAAGAAACTAAACGTTTGCTCGGAATTGATTACCAACAGTTGCAATGGTTAATTGTAGAAGCAGAAGCTCTATTCAACCAATCCCAAGCTGTAGAGGAAGAAGCCAAAATTAGAATAATAAAAAAAGGTGGTGGTAGAAAGCCAAAATTATCTGTGTCAGAGCAAATATTATTAACCTTAGTTTATCTGCACCATATGCCGACATTTCAACTATTAGGTGTGCAGTTCGGGGTAAGTGAATCAACGGCACACAATATATTCCATGACTGGATAGAAATTTTGGGTGAATTGTTACCGCCCTCACTTTTAGAACAAGTAAAAAAAAATCCCATGATTGGGAAAGGTATAAAGAAGTCCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCACTAACCATTTCCCCGTAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 657331-657509 **** Predicted by CRISPRDetect 2.4 *** >NC_019753.1 Crinalium epipsammum PCC 9333, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 657331 36 100.0 37 .................................... CTTTAGCTTTTTCCAAATGATTTTCACCTGAAAAAAC 657404 36 100.0 34 .................................... GTGAATCTTTTTTTTTGGCCAGCTTCCAGTTTAC 657474 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 3 36 100.0 36 CTTCCACTAACCATTTCCCCGTAAGGGGACGGAAAC # Left flank : ATCAATTTGTTTAGAGAGCGACGAGAAAAATTTGCAACTAGCCAAAAGTTTAAAGCGGACAAAGGTTATATAGGAGAAAGTCAAATTGAAACTCCACATAAAAAACCTAAGCTTCAAGAATTAAGCATTGACCAAAAGCGAGAAAATAAGGAAATATCAACGCAACGAATTGTAGTTGAGCATATCATTAGATTGGTAAAAATTTTTCGAGTGGCTACTGAGCGATTCCGGTTGAGACCAAAACATTATGACCAAGTAATCCAGATAGTTTGTGGTTTAGTTAGGTTGAGGATTGGAGCCTTAATGCTAGCAATGTAAAAAATTTGAGCTTTTTAGAAATTCTTGCTATGTAAGCCTGTTAATCTTTGGGTTCTAAATTAACTTGAATTAGCTCAAAGCCTAATTCAGTCGTATTTTTGCTCTTGGCGATCGCCTAAGCTTAAAAACCATCAAAACCTTTCACAGAAAGGTTTTGATGGTTTCTGGAGATGTCTATTACT # Right flank : CCACATCCTACTACCGAGAAAGCTAAATTTTAGCTACTCTAGGCGCACCATATCCTTATGTAATTACAGCTTGTCCTGATGGCAGGGCAAACGCATCAAAATTTGGCTCAATATCGTTGTTTTTTCGTGGACTACGCTCTCAGTTGTCAATTGATCGATCGTTGTGGCAAGATAAAGTAAAATGGGAAGTTATTACTAAAAATTGCAAGTTGTCGTTATAGCAATAATGTGGTAATCATTTTTCTTGGGTAAGTCAGAGCTTTTTCACGGGTTTGTTATAGCTGGAATTGTACTTACAGCAATAAGTACGCGATCGGGAATTTATGTGAGAGTTACGCTCACACTAAGATTATAAATTTCTCTCTGAGGAGCAAATTTACAACGCTTATTGTTAATTAGATAAAACTTTGAGCAGGTAATCGTCATCCATTGAAGCTAAGTAACGTTTATTATTTAGACTTAATTTTCGACTTTTTTCCTGATTTACTCTTATTGACGGC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCACTAACCATTTCCCCGTAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 3 671690-669542 **** Predicted by CRISPRDetect 2.4 *** >NC_019753.1 Crinalium epipsammum PCC 9333, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================ ================== 671689 36 100.0 36 .................................... GCTTTAGGAAAAATAATGTCCAGCCAGGGTGGAACT 671617 36 100.0 34 .................................... ATTTTCCATGCTGCAAAGTAAACAATGTTTTTGA 671547 36 100.0 40 .................................... TCTACGCGGAGTTCCCGGATTGTTACCCCCATTCTTAAAA 671471 36 100.0 36 .................................... GTTTCATTGGTATGCAGGTTCAAAAAGTCCTGTAAT 671399 36 100.0 36 .................................... ATAAAAACGCTGGTTTTACAAATCTCTATAAAAGAG 671327 36 100.0 41 .................................... TCTCTAGCTTCCTAACTTGCTGAGCTGTGTAGCTTGCAAGA 671250 36 100.0 34 .................................... GAAGTTGAAGATCCAAACCCTGTGCAACCTGCAC 671180 36 100.0 38 .................................... CATACTTTCGTCTGCTTTCACATTAGGAGTGAAGCCAA 671106 36 100.0 36 .................................... TTTTTCTCCTAAGGAAAATACGTACTTTGAACTTGC 671034 36 100.0 43 .................................... ATTTTCTATATATTCCAGGAACCATGTTAATCCGCGTTTAAGA 670955 36 100.0 36 .................................... GTTTGACTCCCTTTTCGATTTAGTTCAACCTTTAGA 670883 36 100.0 47 .................................... GATTACCACCCGGAGTTGGTTGCTGATTGCACCAGCCACTTCCAGAG 670800 36 100.0 40 .................................... TCTTAATATCCCGTTGAGATGGTTGCTTTTGATCACCAGA 670724 36 100.0 43 .................................... CGTCTTCTGAAGGAACATAATAACGTTCCCCAGCGGCAGTTAC 670645 36 100.0 37 .................................... GGTTTTTTTCAACCGCATCAAGAATTTGACTTTCTCG 670572 36 100.0 36 .................................... GAACGCGGACGCTGGCGAGCATCAACAAAATTAGTA 670500 36 100.0 44 .................................... TTGTTGGTTCGCCTAAAACGTTGTCAAAAGATTCAAAATAAATT 670420 36 100.0 39 .................................... CTTAAATTCTTTGGGAAAATATATGCAGAGATCATATTC 670345 36 100.0 40 .................................... GGTAAATCGTCGGGTAAAGGGAAGGCGAGTCCAAAAAATT 670269 36 100.0 37 .................................... GTCACTCTTTGACCCTAACAAATCTTTTGGGTTACTA 670196 36 100.0 38 .................................... ATTGCTGTTTGAAACTCTCCCAGATTCCAACTTGAAAG 670122 36 100.0 39 .................................... AGACTATTCAATTCGCTGTTTGGATCATCCGCTTTAGCA 670047 36 100.0 40 .................................... TTCATGTTATTTGCTCCGCTACCGGAATAGACGTTACCGC 669971 36 100.0 37 .................................... ATTCAACGGAAAGTACTTCCATTTCTAAATTTGAAGA 669898 36 100.0 37 .................................... TAATTATATTAGAAATTTGTTGTTTGTGATGTTGTAA 669825 36 100.0 39 .................................... GATAATCCCAGCAATATACAACCAATTGCTGCCAGTAAA 669750 36 100.0 64 .................................... AACCCCCAACCGCTCCTTTCTCGAAACAAATTTCACGTACTTTATATAGTTTTTCCAGAGATTT 669650 36 100.0 37 .................................... GTAAAGTACGGTAAAGGTTGGTTACTTTGGTAACTAC 669577 36 94.4 0 ...............................A...G | ========== ====== ====== ====== ==================================== ================================================================ ================== 29 36 99.8 39 GTCTCGAATCCACTTTCCCCGCAAGGGGACGGAAAC # Left flank : AGGAAATATTGAGCATTTTCGCGTTACTCAGGGTTTGCGAATAAGTTGTGTAGCTATTTCAGGTATGTTAGAACTTAGGCGTTATGGTGCAGAACCTGTTGTGAATAACAATCCCTAATTTATCTCTGCACAACCAGATTATCGACATCTTAGAGAACCCCCAGTCGGTAGTGAGGTGCGTCGGTGGGATAATTTGACTTATATCAACATTGTTGCTATTCTTAAAAAAACGCTGCGAACCTTGATAATTAAATACTTTCAGTTTCTAGAACCTCGTTTCCTAGCTCTAGAAAGAATTGTAAAATGTCTATCGACGCACCTCCAGCAAATTCCCAAAAGCTGATTCTGTCGTGTATCTGCGTCGATGCTTGATTAGATAAGAGTTTTGGGTTTTAGCTTTCAGCTTATTGACAAAAATTTTGAGCTTATTGACTATTCAAAAAGAGGTGCGTCGATTGGCTGCCTGAAACCTGATCAGGGTAAAGCTCCCTGAGCGAAGA # Right flank : AAAAAAGGCAAAATAAAGGTGAGAATAAGAATAATTTAAGCTAATCACTTCTCACCAAAGTGGAAAAATTTGATTTTTGGAAAAAAACAAGCGATCGTACTGCAATCAACAGCGAAGTTAAGAGCTATCGCTTAGTAGAAGTATAAAAGCACAGAGCGATCGCCCGATCTGGTTAAATAGAAGGTTTGAAAGGCAAACCGCGATCGCTAGCTAACTCAGGTAATGACATCTTAAGCCCGTTAGTACGTTCATTTTCTACAAACCATTTGAAAGCTTCACCATTGGGATTTAGTTCTGGAGTAAGTCTGGGATAATGAATTGGGTTACCATCTGTAAAGCCTTGTGCTGCGACGCAAAAAGCTTTAATAAAAGGGATTTGATCAAACTGATTACCACTACTGTAAGCAGCAGTTAATTGTTGTTTAAAAGTTTCAACTGTAAATCTAGCCTGTTCATTCTTAGCATTATCATTTGATAGCAAATCAGAGTAAAATTGCTGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCGAATCCACTTTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 4 992622-993675 **** Predicted by CRISPRDetect 2.4 *** >NC_019753.1 Crinalium epipsammum PCC 9333, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 992622 37 100.0 37 ..................................... AATTTTTTCGTCAGTGGTGGGAATGGTCTATTTATTT 992696 37 100.0 34 ..................................... AAAGACCTAATTCCTTATTAACCGCCTTGCGAAG 992767 37 100.0 35 ..................................... TTTTCAATAGCTGACCCATCAGGATTAATAGTTTT 992839 37 100.0 33 ..................................... TTAAAGAACCATCAGGATTAGTAGTTTTTACAG 992909 37 100.0 48 ..................................... CAGACTATAACCATAGGAAGCTTGAAAATCAACAATTTGATTACAGCC 992994 37 100.0 34 ..................................... GGATATTTTGACTATTAGTAGGTGCCCAAAGATT 993065 37 100.0 35 ..................................... ACGGGAATGGCAGCAGAAGCGGCGGCGAGCGAAGC 993137 37 100.0 36 ..................................... AGAAATCCACTAGGATTATATTTTTTAATAGTATAA 993210 37 100.0 34 ..................................... AATTCGTAGCGGTCTAAGTTCTGAATCAACCTAG 993281 37 100.0 34 ..................................... AACAAATCAACTGGTGTGGGTTAGGCTACTATTT 993352 37 100.0 35 ..................................... CCTTAATAGTCAAGGTGTAGAGTCTCTGGGGTTAC 993424 37 100.0 34 ..................................... AGGATTCGTAACACCGATGATATTAAGTACGTTG 993495 37 100.0 35 ..................................... CTTGGCTACTATGGCGTGGGAACTTCAGTTGGCGA 993567 37 100.0 35 ..................................... GTTAGGGGTTTTTTCTCATGAATTATTCCTTTTTT 993639 37 94.6 0 ........TA........................... | ========== ====== ====== ====== ===================================== ================================================ ================== 15 37 99.6 36 GCGAAAATAGCTAATAATCCCTTTTAGGGATTGAAAC # Left flank : TATTTCGGAAGACAAACGGCGTACTAAAATCCATAGTATTTTGAAGTCTTACGGACAATGGATGCAGTTTAGCTTGTTTGAATGTAATTTGACTGATACTCAATATGCCAAACTGCGATCGCGTTTGAGTAAAATGATTAAGGCTGACGATAGCATTTTGTTCTACTTCCTGTGTGCTTGCTGTCAAACTAAAGTAGAGCGAATTGGCGGTGAGCAAGTACGCGATGAAACTATTTTCTTTGCTTAATGCGCGAAATGGTAGGTGTTGGGGTTGGGTATTGCTAAAAAAGTAGCTCAAAGCTTTATATAGTAAGGGTTGAACCTGAATGAGACTGTTGATCCGATTCGCGCAATCTCCCAACCTCTGACTCAGACTGATGTTTCTGCTATATATATAGATGTGGTTATGCGATCGCTAAAGCCTAAGATGTTATAATGACTGAAGGTTAGCGAATTTGTACCTTGAAAACTTCATACAATCATCGTTTTGGGCGACCGCA # Right flank : CGATTATGTTGATGGAGAACTGGTAATCAGGTGTGGTTAAAATTGCTGAGTTTTTATTGATAAACTACACCATAAAATATAAACTAAAGGTGCTAATACTCAAAAAGTACTAGCTCCCAACAAGAATAAAATCTAACAGCATTGCTATTAAATTTTAGCCAATTACTATAACTAAGTAAACTTTTATATAATATCTTTCATTTACCTCACATTTTAACTAATTTCTTCTATTTCTAACGCTTCAATTGCCTGTAAACCACGAGCATCACCTAATTTTAATAGTGCTGCTTTGGCATCTTCACGAACACCGAGATCTTGATCCTCTTCCAAAACTTGAATCAGGGCATCAACAGCAGTTGCGTAAACAACATTGGAAGGTAATTCTCGGCATAATTGTCCAATCGACCAAGCACAATTACTACGAACACCAGCAACAGGATCTTGCACTAACGCCTCAATTAAAGGGGGAATTGAGGCAACAACGGCTTCATATCCTAAAT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGAAAATAGCTAATAATCCCTTTTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 5 1168835-1168466 **** Predicted by CRISPRDetect 2.4 *** >NC_019753.1 Crinalium epipsammum PCC 9333, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================================== ================== 1168834 37 100.0 44 ..................................... CTAACTTCAGAAGGATGAAGAGTAAGACTGGAATAGTTAAAGGT 1168753 37 100.0 47 ..................................... ACTTGTAACAACCATAGACCATCGAGTTTGGCAGAGTATTTCTTCTG 1168669 37 100.0 41 ..................................... GCATTAGCAACGATTAAAGTGATATGAGCCATGATAAGTAC 1168591 37 100.0 52 ..................................... TTCTTAATATCCAGAGGATACTCGTCACCATATTTGAGTTTGGGCTTTAAGA 1168502 37 94.6 0 ...........C........................T | ========== ====== ====== ====== ===================================== ==================================================== ================== 5 37 98.9 46 GTCAGATACTATCTTTTCCCCGCAAGGGGACGGAAAC # Left flank : GATCTTGATGCGATCGCAGATGTCTTGCAAACTGATAAAAAGGTGAAAGCTGGTAAGGTGCGATTTATTTTACCTACTCAGATTGGAGTAGTAACTATTACTGATGAAGTACCCGCAGATGTAATTCGTCAGGTATTGCACCAGATGCAAGCAGCTTAAGGCAGTTGTCAGATATATAACTGGCTGAATCAGCGATTAAATTGCTTGAAACTGAGATTCTGCTTCGGTTTCAGGCAATCTAACGATTTGTTACACTGACTGCGATTTTGTCGCAAGCAGTATTAAGGAGCAGGACGGAGAAAGCAGCAGTATGAATTTAATTTTACGGGAATTTTGGTTTGACTCCTTAGAAAAATTCCGCTATATTGTCTGTAGTAAGCAATTTTAATTTAATTTCTTCGCGAATTAAGTACAGGGTAGCTTTTTAGACCAGCCTTCTCCGTACTCCTGCGCGATCGCACCTTCAAAACTAAATACAGCAAGGGTTTCAAAACCATAGG # Right flank : TTAGATATCTTAGGATAACTTCAAGCGTTGGAGATTATGCTGTTCTATCTCGTCTTCGGTGAAGGTTTTCATGGAATAGTTTAAGCTTTTTGATAGAGAAAACGGGCAAAATCTAGAACTTCTTCGCGTTTGGCTTCCGATAGGTTATTAAAAATGGCGGCGATTTTATCGGCAGGTGTGAGCCATTGTTTTTTTGCGGCTTTCCAAATTACTATAAATTGCTGAGAAGATAAGGCGCATAATGCAGTGGTTTCCCCATCTTCGTTGCTAAATTCAATTTCAAAATTCTCGCTGTCGTAGCATTCAACAATAGTTCCTTGAGCGCCAACAAATTGTTGATATTCTGGCAGATTAACAAGGATTTCTACGATGTCTAGTAATTCTGGTTTAATCATTGCTAAAAGATTTACTCTTCTACCCGATAACCCAATTCCGCCAAATGTAAACGCGACTGTCTCCACTTGGGTTGCACTTTCACAAATAATTCTAAATAAACCTTT # Questionable array : NO Score: 2.88 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.12, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGATACTATCTTTTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 6 4712169-4712424 **** Predicted by CRISPRDetect 2.4 *** >NC_019753.1 Crinalium epipsammum PCC 9333, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 4712169 37 100.0 39 ..................................... AGGAATATATACCCATCTGTGTATATGTACTTTGCTCCA 4712245 37 100.0 35 ..................................... GATTATGCTCCATCGGTTCGGGTCGGGGCTGTTCG 4712317 37 91.9 34 ........AGC.......................... ATCGGGGCTTTTGGCTGTGGTAAATCTTTATTTA 4712388 37 97.3 0 ..........C.......................... | ========== ====== ====== ====== ===================================== ======================================= ================== 4 37 97.3 36 GCGAAAATTATTAATAATCCCTTTTAGGGATTGAAAC # Left flank : ATCGTCAACAGGGGAAAACGGCTGATGCAGGTGAGCGTATTTTAGGGGAAGCGATCGCGCTAGAACAAGCGGGAGCGTTTGGGATTGTTCTTGAGCATATTCCCGCCTCTTTAGCAGCGCAGATTACACAAAAATTAACTATTCCTACAATCGGAATTGGCGCGGGATCTGATTGTGATGGACAAGTATTGGTAACGGCTGATGTTTTAGGACTTTCACAGCGACAACCACCGTTTGCTAAATCTTATGTAAATTTGCGAGAAATAATTACTCAAGCGGTAACAGATTTTAGTGGTGAGGTAAGAGAGCGAAATTTCCCATAATCAATTAACAATTAACAATGAGTATTGATTTTAGTAAATGTCTGACTGAGACTAATTTTTCTGCTATATATATGTGGTTCTGCGATCGCTAAACCCTAAGATGTTATACTTAGTCAAGGTTAGCGAATTTGTACCTTGAAAACTTCATACAATCATCGTTTTAGGTGATCGCCTGAA # Right flank : CCCACCGTTAAGTGGATTGTCCAAACTTCTGAGCAAAAGTCAACTAATGAAAGTTCGTGAACTCATCCGACTCTTAGAGGACGATGGATGGTATCTAGCTAGAACTAGAGGTAGCCATCGTCAGTTCTACCATCCTGAGAAAACTGGAGTCGTAACAGTCCCAGGAAAATTTTCAAAGGATGTGCCAATTGGGACGCTGAAAGCAATTTTTAAACAAGCTCAATTAGGAGACGAGGATGAAATATAAGTACGAAATTATCATTGAAAAAGCTGAAAACAATTACTCAGCTTTTTCACCCGATGTCCCAGGATGTATCACAGTAGGTGACACGGTGGAGGAAACTTTACAGGAAATGGAAGAAGCTATCGAGTTTCACTTAGAAGGATTAAAAGAGCGCGGCTTACCTATTCCTGAACCTAAAACTAATCACTTCTATGTAGAAGTCAACGCTTAGTCACATATAGCAGTTAGCTTGAAGTCCCCCTTAAAAAGGGGGATT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGAAAATTATTAATAATCCCTTTTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 7 5029582-5031781 **** Predicted by CRISPRDetect 2.4 *** >NC_019753.1 Crinalium epipsammum PCC 9333, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 5029582 37 100.0 34 ..................................... AAAAAACAGTTCCCACCAATAGCAGTAATAGCAG 5029653 37 100.0 38 ..................................... ATCTCTAGCCCAAGAGAAGCCAGCCATCCAATCACACC 5029728 37 100.0 36 ..................................... CAGAAATTACGACAGACGCGCAAGCAGGATCAGCCA 5029801 37 100.0 34 ..................................... AGCCAGATAATGATGATAATGCTAGAGGCTGTCC 5029872 37 100.0 34 ..................................... GCTGCTTTTTTATTGATAGTTCTTGATCTTCCAT 5029943 37 100.0 36 ..................................... AAAAAATTAACTATTTACTTAAAAGTTAATTTTTTA 5030016 37 100.0 36 ..................................... TTGAATTCTTGTTGTGTCATAACCAAGGTGGCTATG 5030089 37 100.0 36 ..................................... AGATAGTAATAATGAACTTTTAAGCAGTGGCAAATA 5030162 37 100.0 36 ..................................... AATTTCTTCAATACGCTCCCCCATCTGGCGTAATGA 5030235 37 100.0 34 ..................................... ATGGAAGAGTATAAAGCCAAGGATGGCAAGATGA 5030306 37 100.0 32 ..................................... TCGCCAGTTTGATTAATCAAAAAACTCCGGTC 5030375 37 100.0 35 ..................................... TAAGTGTCTAAACTCTATCCCTAATTCTTCTAGTT 5030447 37 100.0 36 ..................................... TCTCTATTGATAAAATCCACTCGATTAATTGCTTCA 5030520 37 100.0 35 ..................................... CAGACCTCCCCGACGAGACAGCATACTCAGAGGGA 5030592 37 100.0 34 ..................................... ATCAAAACTTACTGGTAGCAGCTAAGGAACTATG 5030663 37 100.0 35 ..................................... TACGAGAATCCTCTAACCATTCACCGTGGCTTGTA 5030735 37 100.0 36 ..................................... GAATTGTGATCGGCGTTGATACAAAGCTTTGAAAAC 5030808 37 100.0 31 ..................................... AGCATCTTCTGGATGTGAGCGTTTAAATTCC 5030876 37 100.0 35 ..................................... TTTTACCTTTTACTTTGACGCTAGAAGGTTGCCGT 5030948 37 100.0 36 ..................................... GAGGGATAGTAAATCCTCCTCAGTTAAATCGTATAA 5031021 37 100.0 34 ..................................... TCATTAGACTTTCATACAAGTGAAGTTTTAAATA 5031092 37 100.0 34 ..................................... ACATACAAAGGCATTAGCTGGTGGTACTACTAAT 5031163 37 100.0 34 ..................................... CCCTTATTAACTCTCTTTCAAACTGTGCAATAGC 5031234 37 100.0 35 ..................................... GTAACATTTAAACGCCATACCATGCTCCTGGATCA 5031306 37 100.0 34 ..................................... TGAAGCTTTATTAATATCATGCACAATCAAAGCA 5031377 37 100.0 40 ..................................... CTGATGTAGTATTTCTTAAGCAATTAAATTATGGCTATAG 5031454 37 100.0 36 ..................................... GTTTATTGCGATCGCCTTTACATTTTTCTAGGGGAA 5031527 37 100.0 36 ..................................... AAATGATTTAGTTATAGATGAAAATGTATCTCAGGC 5031600 37 100.0 35 ..................................... GGTTCTGGTGCAGTTTCCATGCGATCGCTAATCGA 5031672 37 100.0 36 ..................................... GGTTGAGTGAATAGTGATAGTTGCATAATTATTCGC 5031745 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 31 37 100.0 35 GTTTAAATGCACCTAAATCCCTTTTAGGGATTGAAAC # Left flank : GGGCGATAAGCATCAAAAATTTGGATACGCCAACCAGGATACTGTTGTTGGAGATTTGTTTGCGCTTGGGTTAATTGTTCGAGTACACCTTTACGGAGATAATAAGGCGATCGCTCTCCATAAGTAGCACCTAGTTTGATATATGGATGGGGAGATGCAATGGCAAATTCCAACGGAATCGGCAGCAGTTGTTCCCCGCACTCTAAAATAGAAATCTGTTGATAAGGTTTCATTGGTATGAGTCAGTTAATTGCGCGAATAGGTAGGTGTTTTTTTTAGTTAAGCATGATTTTAGGCTAAACTCCTTGCTGAATCAGGGTTTGGGGTATTATAGCTTTGATAGTGATTCGCGCAAACTCTATAATGCTTGATTTATCTAGATTTTTACTTTATAGTTGAAATTGAAATGCGGTACTATCTAGCCCAAATGCTATGTTCAGTATTAATCCGCGCAACAGCACCTCGAAAACTAAATACAGCAACGCTTTCATGCTCCGGCA # Right flank : CCAATAAAAGCCAACAAATCTAATATAAAAATCCGCCTCGGTTGAAATTAATCGAAAAATATAAACTTTTGTAACATATAGACAAAAAAGTAGTTTTTTATCGGGAGTATCAAGATAGTTAGATGTATCTCTATACATCATCAAGGCTGAAACCGCAATAGAAAACTCAGTTAGTTCACTAAGTTTGCATATTTTCTAAAAATCACATCTATTTTCAAGTAAGTTTAACAGGATCAGAAATAACCATGAACAAGCAAGTTTTAAGAATAGCGATCGCATTACCGATGGTAATCGCCAGTGCTAATTCTAGCTTGGCGAATGACACTCGAAAACCACCAATATCAAATCAAGCCACAATTGATAACATACGAATAAATGGCAATCAGCAACCATTGTTTCCTTCTACGGATACACGGGAACGACCGAAACCCAAAGGCCCTAAAGGTTTCGAGGTGGGTGTGCAACAAACTCCTAATCAACAGGTATTAGGCAATCCAGCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATGCACCTAAATCCCTTTTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA //