Array 1 27645-27015 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_NXCI01000016.1 Moraxella catarrhalis strain A16 A16_contig_16, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	============================	=================================	==================
     27644	    28	 100.0	    32	............................	TACCTGAAATCAGACACGATCAAATTAAATTA 	
     27584	    28	 100.0	    32	............................	CCAAAGACACCACACATCAGCTACTGCAAACC 	
     27524	    28	 100.0	    32	............................	ATAACAGCAACAGGTACAACCGCCGATAAGAT 	
     27464	    28	 100.0	    32	............................	TTGCAGGTGCTGAGAGCATTAGCGATAACTTG 	
     27404	    28	 100.0	    32	............................	GTTGTTAAGCTTTGATTAAGTGTGTTAATACT 	
     27344	    28	 100.0	    32	............................	TTGATTAGTTGAGTTTATATTTGCCCAATTGG 	
     27284	    28	 100.0	    33	............................	ATTCATCTCATCAGCCATCATTTCGCATTCAGG	
     27223	    28	 100.0	    32	............................	GCTTTGGCGGTTTTATTCGGCTCACTTGGCGT 	
     27163	    28	 100.0	    33	............................	AACCGCTTTAAATGCAACAGATAAGGCATCTGT	
     27102	    28	  96.4	    32	...................A........	TGGGGAAGTTAGGCATTTAAAATGGCAGGATA 	
     27042	    28	 100.0	     0	............................	|                                	
==========	======	======	======	============================	=================================	==================
        11	    28	  99.7	    32	CTTCACGACCGCACAGGTCGCTTAGAAA	                                 	       

# Left flank :   CACAGGTCGCTTAGAAATAACAACCCCAGTGGGCGCAAACTTTTAAGG
# Right flank :  TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTACAGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGCGCCAATGCCGAAAGCTATAATGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CTTCACGACCGCACAGGTCGCTTAGAAA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [5,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-7.10,-7.40] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,5.65   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
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