Array 1 10965-11293 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXZF010000028.1 Enterobacter bugandensis strain G4868 NODE_28_length_11340_cov_345.785, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10965 28 100.0 32 ............................ GTATGTTTTTGTGCATTTTGTCCTGGTAAGGA 11025 28 100.0 33 ............................ AATAAGACCTATCCCGATCACCTCAACCCGGCC 11086 28 100.0 32 ............................ TGAGAGCACGCCAGCGGCCTCTCTCTTTGTGC 11146 28 100.0 32 ............................ ACATGTTCACGTAGTGGATTTTTGGGTGATTA 11206 28 100.0 32 ............................ GCCTCTCGTTTATTTGAAATGGGATTCTCAAT 11266 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 6 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCCCTCAAACGTAGCCCGTATGCCGTTGCCTAGGGGCTTATCTGGAAGAGGTGAAAACCGGCCTCACGGAATCCATGCGTGATTTTCAGATAGTGGAATTTGAGAAAGAAGCGGAACAACCGCGACAAAAAGAGTGGCTGCTGGAAGATACAGAAACGAAATGCGACTACTGCCGGGCGTTAAATCATGTTCTGCTGGTGTCGCATTTTGACCGCGACATGCTGCCGCATCTGACGGGGCTACTCCATGACATTACGCATTCGATGGCCGCAGATGTCGTTGCGCCTCAACGTGAAGAAACGGTAATTCACATTATTTCCTGAGTGCAATCCAGGGCGTCGGGGGCGTTATTCTGACGCCATTGGTTTATACCCTTTTTTCTGATGCTTACGTAACATATTGATTTATATGGTGCGGATTTACGCTCCAGAAAAAAGGGTTTTAGGCGTAAAAGTTGATTATTTTATTTGCTAACAATAAGATGGCGTTGTTTCCTTTCA # Right flank : ATTACCTTTTTATACTTTTTGTGCGCATAAAAGTTCACTGCCGTACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 4776-4023 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXZF010000011.1 Enterobacter bugandensis strain G4868 NODE_11_length_173031_cov_379.158, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 4775 28 100.0 32 ............................ ACCGCGTTTCGCGTGATGTCGTGCGCACGCAG 4715 28 96.4 32 ...T........................ AGCAGGTTTTGTAACGTGCGCTCGATGCGCGA 4655 28 96.4 32 ...T........................ GACGATTACGTTCGCAGAACGCGCCCGCTCAT 4595 28 100.0 32 ............................ AAAAACCGTTGGACTGGTCGACCTTTTTTCGC 4535 28 100.0 32 ............................ TCGATGCAACCCGCAACTACCTGAAAGACGTC 4475 28 96.4 34 .......A.................... CTCCCGGGTGTCTTCTTCCGTGGCCGTGTCACTC 4413 28 100.0 32 ............................ GATCACAGGTACTGATCCAAAGAGAGCTGGAG 4353 28 100.0 33 ............................ GGTCACGGTCAATAACGACATGACGCGTGAGGT 4292 28 96.4 32 ................T........... AGAGGACGAATACCCGGCGTTTTGTGCATAAG 4232 28 100.0 32 ............................ CTTAAGCTCATGTTCTAGTAACAAATCATTGA 4172 28 100.0 33 ............................ TCGACACGATATAACCGGCCTGCTGGTTGGTGT 4111 28 96.4 32 .......A.................... TGAAGTATGGCGGCGCGGCAGGCGTTCCAACC 4051 28 82.1 0 ......C....A.........A.GC... | C [4025] ========== ====== ====== ====== ============================ ================================== ================== 13 28 97.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTCACGGTTTGCATAAGCTGTTTGGCGGCGTGGGTTTTATCAGCGGCATGCTTGTGGAGAAAGGGCTGCCGGGATTTATTGCCTACGGCGTGTTGATTGGCGAAGTGGTGGCACCGATTTTGATTATTGTCGGGCTCTTTACGCGCCCGGCCGCGCTGGTGCTGGCGTTTACGATGATCGTGGCATGGCTGATGGTGGGAATGGGTGAAACGTTCGCGCTCGATAAGGTTGGGGCATGGGCGATTGAAAGTCTGGTGTACTTCTTTGTTGGCTCGCTGGCGGTGGCGTGTTTAGGGGCAGGGCGGTTTGCGTTAGGGAAAGCGCCTGCGTGGCAATAAAGCTGGGTACTGAAAATATAAGGGTCTCTGGACCCTTTTTTATTGGTGGTTTTTAAGTCTTTGATTTTATTAAGCGGAATTATTTGTGATGAAAAAGGGTTTAAGGGGTATTTTTTAGGGGAATTCTTTATCTGACAAGGTGATAGGTGTAGATTGTTCCA # Right flank : CGTAGGTCGGGTAAACGCAGTGCCACCCGACAAAAAGCCCGGTGGCGCTAGCGCTTACCGGGCCTACGAACGAACGTTTATTGCTTATGCGAGGACCAAATCCCCCTGCGGGTGGCACGAGCACGCCAGCACGTAACCCTCGGCAATTTCCGCGTCGGACAGCGTCATGGTGCTGGTGACGGTATATTCCCCGGAAACCACTTTCGTTTTACAGCAGCCGCACACGCCCGCACGGCAGGCCGCGACTACCGGCACCTTGTTGCTTTCCAGTGCTTCCAGCAGCGTGGTGCCCACGCGGCCAAAGAAGGTCTGTGCGGGCTGCAGTTTGGTGAACTGAATCCCGCTGGTTGCCGCTTCCGCCACCGGCGTGAAGAACTGCTCTTTGAAGAAGCGGGTCACGCCAAGCGCTCTAACTTCTTTCTCCACGATATCCATGTACGGCGCCGGGCCGCAGGTCATCACGGTACGGTTCGCAATGTCCGGCACGCTTTGCAGCAGCT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3-752 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXZF010000012.1 Enterobacter bugandensis strain G4868 NODE_12_length_161406_cov_376.108, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 32 ............................ ATTACCTTTTTATACTTTTTGTGCGCATAAAA 63 28 100.0 33 ............................ GTCGCCGTTCTGACGATGAAGGAGATAGCTTCT 124 28 100.0 32 ............................ GAAGTCCTGGCGGCCACGAAAGTCATTCAGAT 184 28 100.0 32 ............................ TGGTCGATGAAGGTATCCAGCCAGACAAACTT 244 28 100.0 32 ............................ CGGTACGAGCGGATGAAGCCGACCATCCTGAT 304 28 100.0 33 ............................ TTAGGCTCAAACAATCCCTGCCAGCCGTTCGCA 365 28 100.0 32 ............................ TGCTGCGCCAGCTCGAAATCCCTGAGCGCTTT 425 28 100.0 32 ............................ GTTAAGAGCGGCATCCCTGACTGGGCCTATAA 485 28 100.0 32 ............................ AACATTCCGAAAGTAACTCGGAATTATATAAC 545 28 100.0 32 ............................ GCCTTTCGCGTCTGAATGCGGCGGATTGGAAA 605 28 96.4 32 ...............T............ TTTAGTTAATAAGTGTTTACGCATCGGTTGAT 665 28 100.0 32 ............................ ATTACCTTTTTATACTTTTTGTGCGCATAAAA 725 28 82.1 0 .....................AC.ACT. | ========== ====== ====== ====== ============================ ================================= ================== 13 28 98.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATG # Right flank : AAAACTGCCCCTCTTAAACATTTACTTTGCCTATTCAAAACTCAATATCATCAAACCTACACTCTCTATTTTTCACAATAAATAAAAAACTCATTCACGCGCCAATTATATTCTAAAAAATATATTATTCGTAAAAATAATACATTGAATGGGAAAGTGATTTTTCACTTTATTATCACGATAATTACTCTTCATTTGATACCCGTCACATTTGTTCTCATCTTATGTCCGATAACATACTACGCATTCAACGCCTTGAAATAAAAGCCCTTAATATGTCGGAAAATAGCATCGCTCCCACGGATTTAAAAACCATCCTGCATTCAAAACGCGCCAATATTTATTACCTGGAGAAATGCCGCATCCAGGTGAATGGTGGACGCGTTGAATATGTCACCCGGGAAGGAAAAGAGTCTTTTTACTGGAATATTCCCATCGCGAATACCACGGCAGTGATGCTGGGAATGGGAACATCCGTTACGCAAATGGCAATGCGGGAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10252-11062 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXZF010000012.1 Enterobacter bugandensis strain G4868 NODE_12_length_161406_cov_376.108, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10252 28 100.0 32 ............................ GTCCAGGTGGGCTACGCTGATAACCCTGACGC 10312 28 100.0 33 ............................ TGCAAGGTGGTATCAGCCATTATTCTCTAGCTC 10373 28 100.0 32 ............................ TGAGGACTACCGTAAAGCCCAGAGGTGGCTGG 10433 28 100.0 32 ............................ GGACTTAATCAACGTCTATAAGCGCGTTGTAG 10493 28 100.0 32 ............................ GGTGTTCCTGAAGCTCTGAAACCAATGACTCA 10553 28 100.0 32 ............................ ACCAAGCAGGCGGGCGAAATCTATTATCGTGA 10613 28 100.0 32 ............................ GCAGAGCGGAACGTGCCGAGCACGCAGCGGAG 10673 28 100.0 32 ............................ AGGTTCCGTTGACGTAGTTGTACGTAAGTGCC 10733 28 100.0 32 ............................ GCATAACTTTCGTCGTACGCATCTCGGGAACG 10793 28 100.0 33 ............................ GAAAAAAACAACCCAACCATTAACAACATTGAG 10854 28 96.4 33 .....T...................... GACGATCTGGAAGAAGCGGCAGCCCTCGCTAAT 10915 28 96.4 32 ................A........... TTCAATCGAATTAACCGACAGTACCGGGAGTA 10975 28 89.3 31 ...........C...C......C..... ATAGAAAATAAGGCCTAACAGTCGTCGCACC C [11000] 11035 28 75.0 0 ......C.T..A....A....C.T...G | ========== ====== ====== ====== ============================ ================================= ================== 14 28 96.9 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGGGCTACGCGTTCGCTCTCATCCGGCGTCAGCGTCCGTCCCGCGCTTTTGCGGCGGGCCACGTTACGTTCATTAATCCCTGTAACGCGTAAAATGTCCGCTTTCGACATGGCCGTCCATTCATGAATATTGTCGAGCACGCTGACGGGCAATCCCTGGTTGAGAAATTCTATCAGCCGCATACCTCTGTTCGCGGGTAAACCGGCGTAGCGCCAGAGTGCGTTATCAGCAGGTTTCTTGGCGGGGATCCAGGTTCTCATGTTACCTCCTGATTAATGTCATTTGTCATGGTTAAGTATAGCCATTTGTCAGATGGAGTGGAATGGGGATTTTTTGTGCTGGGTGGTTTGTGAGAAGAACAATGTTTTGACCCTAATTTTTAACGGTTGTGTAATTCATTGATTTTAAATGAGTATTTTGGGTGGATAAAAAAGAGGGTCAGAGAAGGTTTTTTAGCTTTTTTTGTATGCAAATCAGAAGGGTGTGGAGATATTATTTCA # Right flank : GCTGGAACGAACGGCTAAATAATTGTTCAAATAATCAACAGCACCACTAAAAAATAAGGCCGGGAATATCCCGGCCTTATTTAATATTCATCTGCCATTACAGGCGAAAAAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAAAATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCCAGCTCTACGCGAAACATGGTATTAGGCAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGAATTGCGCGATTAAAACGCAGCAAAACAGTTTCGGCGCATTGCCCAAGCGTCACGGTACAACCGAACAGGAAGCGCATTCGTAAAGGGGAGACAACA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //