Array 1 127553-126670 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI929742.1 Escherichia coli BIDMC 9 adjGr-supercont2.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 127552 29 100.0 32 ............................. CAAACGTCAGGCGGAAGTGTTCCGGTCATATA 127491 29 100.0 32 ............................. GACCAGTCGGGCCAGACATCGGGGACGCAGAA 127430 29 100.0 32 ............................. CCGACCGCCATCGCGCATTTCGTCGAACGTCG 127369 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 127308 29 100.0 32 ............................. CAACATTTTCCAATATCACCCAGCAATCAATT 127247 29 100.0 32 ............................. TCATGAAGGCTTCGATTATTTCTTGATACCTG 127186 29 100.0 32 ............................. ATTTCATTAATTTTGCAGAGAAGTGTCTCGAA 127125 29 100.0 32 ............................. CAATAACACCGGCATTTGTCCACGACAATATT 127064 29 96.6 32 ............................A GCGTAAGAAAACAATTTTTTCAGAAAACTAAC 127003 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 126942 29 100.0 32 ............................. TTTATAGCGCCAAAATTGACGAAAGACATGTT 126881 29 100.0 32 ............................. GGAAATTAGGCAAATGTGAACACGGCGGCCCC 126820 29 100.0 33 ............................. CCATAACCACCCCCATCATGAATATTTTCCGGC 126758 29 100.0 32 ............................. GGCGCACTGGATGCGATGATGGATATCACTTA 126697 28 72.4 0 ..A........C..T....T-.G..CT.. | ========== ====== ====== ====== ============================= ================================= ================== 15 29 97.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTGTATGTAGGTGATGTATCCGCAAGAATCCGTGAAATGATCTGGGAACAAATATCTGGACTGGCGGAAGAAGGCAATGTGGTGATGGCATGGGCTACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACTCCGGTAGATTTGGATGGTTTAAGGTTGGTCTCTTTTTTACCTGTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : CAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGTTTCTTCACCAGCGGTAGTATTATCCGCATAACATCACGGCAACGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGAGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 154330-153996 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI929742.1 Escherichia coli BIDMC 9 adjGr-supercont2.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 154329 29 100.0 32 ............................. CTCAGCGGCAAAAAATACGATCTCGCCGGTGT 154268 29 100.0 32 ............................. GCAAACCGGCATCAGATATAAGCTGTTCTCTT 154207 29 100.0 32 ............................. GACTGACACAATCTCAACTTGCTGAATTAACA 154146 29 100.0 32 ............................. AATGGCGCTGCCGATCGACAAATGGGACCTGG 154085 29 96.6 32 ............................T ATCGGGTTCCCTTTTAATGTGATTCCGAATTC 154024 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCATCCATCTTGCCCATCCTGAACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : GCTTTAACTCCATTTATCAAAGCGCAATTAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGATAGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGTGTTTTCTTTTCCCGGTCAGTCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGCTGGCATCAGATTTCTAAGGAATACGACAACGTGTTCCCCGCGCCAGCGGGGATAAACCGATTTAGCCCTATCTCAACGTTCAGGTGTTTTGGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGGAGCCAGTGCTAACGATATCGCGGCCGCGCGTGTTCCCCGCGCCAGCGGGGATAAACCGTTGAAATGTGGCCACACCGTGTTAATGTATGGGTGTTCCCCGCGCCAGCGGGGATAAACCATTCCGGCTACTTTTGTTGCTCCCTGCTCATC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //