Array 1 431951-432649 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGDC01000001.1 Salmonella enterica subsp. enterica serovar Muenster strain TRWAIB .SLX_12186.D708_D506.HJ72NBBXX.s_1.r.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 431951 29 100.0 32 ............................. CCCAGAAAAGTTTGTTTAGGCAATCAAGCCCC 432012 29 100.0 32 ............................. GCGTATGAGGGCGCGCAACAGGCGATGCGTGA 432073 29 96.6 32 ............T................ CCGAAATACGATGCCGGAATATCGTAAACGGA 432134 29 100.0 32 ............................. GGAGGACGCTACTATCGGATTCGCTCCGGGGA 432195 29 100.0 32 ............................. GATTTACTAAGGTCAACAAGGGATTGAATTGG 432256 29 100.0 32 ............................. CTCATGCGCAGCACTGGATCGAGAGCGAAGGG 432317 29 100.0 32 ............................. GGTGAGAACAGGGTGCATGGGAGGGAATAATT 432378 29 96.6 32 .....T....................... CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA 432439 29 100.0 32 ............................. ATCCCAAAACATCTTTCCCTGGTTCCTCTCAG 432500 29 96.6 32 ......G...................... GGGATCGCGTTGGCGGTCGCATCCGTTGCCGT 432561 29 93.1 32 .....A......T................ TACCAACAATTCAGCGTTACGCCAACGGTAAC 432622 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 97.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 449205-453201 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGDC01000001.1 Salmonella enterica subsp. enterica serovar Muenster strain TRWAIB .SLX_12186.D708_D506.HJ72NBBXX.s_1.r.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 449205 29 100.0 32 ............................. CAGCTTTAGCATCGGTCGACAGCCCATCTGGC 449266 29 100.0 32 ............................. CGTCCTTTACATCCCAGACCACACTAACGTCG 449327 29 100.0 32 ............................. CACTCGCTGGAGCTGGTTGTCGCTATCAGCAA 449388 29 100.0 32 ............................. ATGAATCTGTAATTCGTTATAGCTCATCATTG 449449 29 100.0 32 ............................. ATACGCTCAACCTAGCTCTTACTCAACTACAT 449510 29 100.0 32 ............................. GGGCGGGTAACAGCGTGCTTGGTTCTGGTAAC 449571 29 100.0 32 ............................. AGAAAAACCGCTTTGTAATTACTGGTCATGTT 449632 29 100.0 32 ............................. CGTGTCAGCCAAGGTGCAACGCTACTACGCAC 449693 29 100.0 32 ............................. GAAGGTGTTTTTTATTCAAAAGATAGGATACC 449754 29 100.0 32 ............................. CCAGTTTCTAACGATATCGTCCACCAGCTTCG 449815 29 100.0 32 ............................. TATGACTAATGCACAGTTAAAACGGGTATGGG 449876 29 100.0 33 ............................. CAAAATGTGTTGTTATGATGGTAGCCTTCAGAC 449938 29 100.0 32 ............................. TCAGCGCCGGCGATCGGGCCGCCGATTTTGTC 449999 29 100.0 32 ............................. GGCATGTCGTGGTTCAGGATGAGAAAATCCCC 450060 29 100.0 32 ............................. ATATTCAGGAGCGTATCGTGGCCGAGATCGCA 450121 29 100.0 32 ............................. CGGCCCCGTATAAATCTCGTGGCGCACAAATG 450182 29 100.0 32 ............................. CTCGCGCATTGTCTTTTGATCCCATAGCGTAT 450243 29 100.0 32 ............................. GCGATCTTAAATTTGCCGCCGCGTAATTTTTG 450304 29 96.6 32 ............................T CGCCCACCCTGAGTATTATCACTACTCCGGAC 450365 29 100.0 33 ............................. CCAGCGAGCGCTGGCTTCAGGATGGGGTTAGGC 450427 29 100.0 32 ............................. GGGCCAATAAATGACGCTAAAACGCGCATATA 450488 29 100.0 32 ............................. CCCTGGTAGAACTTTATACGCAAGCGCTTATG 450549 29 100.0 32 ............................. TCTCTACACAGGAGCACAGGACATGAATAGCA 450610 29 100.0 32 ............................. TAGCCGTCATTACAGAATTAATTACACGTGAA 450671 29 100.0 32 ............................. CGATTGTCCAGATCACATAAATTTGTATAAAA 450732 29 100.0 32 ............................. CAAATGGATTAGTGATAGCCTCCTTTTATTAT 450793 29 100.0 32 ............................. TATTTCACTGACTGACTACGGCGGATCGAGTA 450854 29 100.0 32 ............................. TCAGGAAACAGCGCAATATTGATTTACTCGCA 450915 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCGGAGATGGTG 450976 29 100.0 32 ............................. CATTTTCTCGCACTCTGTCTTGGTCAGCTTCT 451037 29 100.0 32 ............................. CCCATTGAGCACATGCACGTTGCCGGGTTAAA 451098 29 100.0 32 ............................. CGGCCCGCGTTGGTTATGAAGAAAAGCACTAC 451159 29 100.0 32 ............................. CGCACGATTCCATCACCTAAAAACGACCACTT 451220 29 100.0 33 ............................. CAAAATTTTAACGGCCATGACCAGGCAGGGATT 451282 29 100.0 32 ............................. TTGTCGCGCCTGGTATGTGGTGAGATTTGCAA 451343 29 100.0 32 ............................. TTTGGAAACCATGCCTGATCGCCAATATCTGA 451404 29 100.0 32 ............................. ATTAAATATTCCGCGCGCATTCAGGTACCCGG 451465 29 100.0 32 ............................. GGGAATGCCCCATTTGCAAGCGTCGCGGAAAA 451526 29 100.0 32 ............................. CTGTTTTGTCTCACGCTGGCGACCTCCCTGGT 451587 29 100.0 32 ............................. GCGGGACCGGAGGCGCAAGTGGTGGCGCTTTA 451648 29 100.0 32 ............................. CTTGTTTCTTCTAATCTCTTTTCGCGTTGGTA 451709 29 100.0 32 ............................. ACATAAACGCACGCGCGGGGATCCGAATTTTT 451770 29 100.0 32 ............................. GTGAACGCGCAGAATATAGATGGGGACATTAC 451831 29 100.0 32 ............................. GCGTTTGAATCCTCCTGGTGGCGTATGCAGGG 451892 29 96.6 32 ..........T.................. GCCCGAGACACCCGCGCGTTATTTTTGAACCT 451953 29 100.0 32 ............................. TTTGAACAGGCGCTGAACTGGGCTGATATCGC 452014 29 100.0 32 ............................. CTGGTGGCCGCACTGTGTGCCGACGGGGAATT 452075 29 100.0 32 ............................. TATTTTTGCGGGATCAATGTCGGCTCGAGCAC 452136 29 100.0 32 ............................. TTCGCGCCAGATTTTAGCGAGGTGATACAGGT 452197 29 100.0 32 ............................. GTCGGGCTATGCGTCTACAGGCGGCCTCTGGC 452258 29 100.0 32 ............................. ATGCGGCGAACTTTGTCCACCAGTTCGTTACC 452319 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 452380 29 100.0 33 ............................. ATATGCGGAATCACCAACAACACGCGCGCCCTC 452442 29 100.0 32 ............................. GCATACCGCATTTTCAATAATTTCAGCACCGT 452503 29 100.0 32 ............................. TTGGCAATTGACAGTTTGCTGGATGTGGACAC 452564 29 100.0 32 ............................. AGTTATTCCCGGTGTTGTCTGCGAAACAACAC 452625 29 100.0 32 ............................. ATCGCTTCCAGCCGTTCTTTCTCCTGCATCAG 452686 29 100.0 32 ............................. AGCGTCTTTCTGCTCTTTCTTGGAGGCTATTT 452747 29 100.0 32 ............................. CCGCTGGCGGTGAATACCATGCGGCGTATCGC 452808 29 100.0 32 ............................. CATGGATTTGCCCCAACTCATGGCGGCTGGCT 452869 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 452930 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 452991 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 453052 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 453113 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 453174 28 82.8 0 A.....................-.C..GT | ========== ====== ====== ====== ============================= ================================= ================== 66 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCTAGATTAATGACCAGCAGCGTATTGTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //